BtaEX0034477 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99174540-99177442:+
Coord C1 exon
chr11:99174540-99174652
Coord A exon
chr11:99174985-99175002
Coord C2 exon
chr11:99177388-99177442
Length
18 bp
Sequences
Splice sites
3' ss Seq
CTTGGATCCCGCCTCCACAGAAC
3' ss Score
6.66
5' ss Seq
TGGGTTAAT
5' ss Score
-3.68
Exon sequences
Seq C1 exon
GAAAGGGAGCTGGAGCTGCAGAAGGAGCAGCGACGGCAGGAGGAGAATGACAAGCTGCGCCAGGAGTTCGCCCAGCATGCCAACGCCTTCCACCAGTGGATCCAGGAGACCAG
Seq A exon
AACGTACCTCCTCGATGG
Seq C2 exon
GTCCTGCATGGTGGAAGAATCCGGGACCCTCGAATCACAGCTTGAAGCTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.000 C2=0.526
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
A:
PF0043516=Spectrin=FE(20.7=100)
C2:
PF0043516=Spectrin=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAGGAGAATGACAAGC
R:
ATTCGAGGGTCCCGGATTCTT
Band lengths:
114-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development