GgaEX0006464 @ galGal3
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5805460-5809543:+
Coord C1 exon
chr17:5805460-5805572
Coord A exon
chr17:5806400-5806417
Coord C2 exon
chr17:5809489-5809543
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGGATCTTCACATTCCACAGGAC
3' ss Score
7.87
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GAGCGTGAATTGGAGTTGCAGAAGGAGCAGCGGAGGCAGGAAGAAAATGACAAGTTGCGCCAGGAGTTTGCTCAGCATGCTAATGCCTTCCACCAGTGGATTCAGGAGACAAG
Seq A exon
GACTTACCTGCTAGATGG
Seq C2 exon
GTCCTGCATGGTGGAGGAGTCGGGAACACTGGAATCCCAGCTGGAAGCTACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719_MULTIEX2-32/40=31-34
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.000 C2=0.505
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
A:
PF0043516=Spectrin=FE(20.7=100)
C2:
PF0043516=Spectrin=FE(16.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGACAAGTTGCGCCAGGA
R:
ATTCCAGTGTTCCCGACTCCT
Band lengths:
104-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]