GgaINT0124393 @ galGal3
Intron Retention
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5805463-5805695:+
Coord C1 exon
chr17:5805463-5805577
Coord A exon
chr17:5805578-5805679
Coord C2 exon
chr17:5805680-5805695
Length
102 bp
Sequences
Splice sites
5' ss Seq
ATAGTTTGT
5' ss Score
-2.08
3' ss Seq
AAATGTCTCCTGCTGAACAGCAG
3' ss Score
3.06
Exon sequences
Seq C1 exon
CGTGAATTGGAGTTGCAGAAGGAGCAGCGGAGGCAGGAAGAAAATGACAAGTTGCGCCAGGAGTTTGCTCAGCATGCTAATGCCTTCCACCAGTGGATTCAGGAGACAAGGTATA
Seq A exon
GTTTGTCTTTCCAGGAGCAACTCTTATAGAATTGTGCAGCTAATTGTACCCATCCTACGTCTGCTCAGTCCATCTAAGTTGTAAATGTCTCCTGCTGAACAG
Seq C2 exon
CAGCTATTGAGGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719:ENSGALT00000007516:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(4.8=12.8),PF0043516=Spectrin=PU(20.6=56.4)
A:
NA
C2:
PF0043516=Spectrin=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]