BtaINT0140459 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99174540-99175002:+
Coord C1 exon
chr11:99174540-99174652
Coord A exon
chr11:99174653-99174984
Coord C2 exon
chr11:99174985-99175002
Length
332 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CTTGGATCCCGCCTCCACAGAAC
3' ss Score
6.66
Exon sequences
Seq C1 exon
GAAAGGGAGCTGGAGCTGCAGAAGGAGCAGCGACGGCAGGAGGAGAATGACAAGCTGCGCCAGGAGTTCGCCCAGCATGCCAACGCCTTCCACCAGTGGATCCAGGAGACCAG
Seq A exon
GTGCGGCCCTACCGCTGGGAGCACAGTCCTGGGCTCCGGGTGCCCAGGCCCGGGGTCAGGAGCTTGGCCTGGTCTGGCTGCGGCCGGAGGGGTGGGCAGACTGAGGAGCATTGCCAGGAGACTGTTCCCGAGATGAGCCGCTGGTCCTGGATTGGGTGGGACTGAGCGTGGCCGCCCCGCACGGTGACGGTGACAGAGGTGCAGAGTCCAGTCGACGCGGTACTGATGATCTGGTTTTGTCTCTCTCTCTCTCGTGTCTGCCTCTGCCCCTTGCGATCGCTGCTGTCCGGACACCGCCCTGTCTTGTGGCTGCTTGGATCCCGCCTCCACAG
Seq C2 exon
AACGTACCTCCTCGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327:ENSBTAT00000020395:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
A:
NA
C2:
PF0043516=Spectrin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development