DreINT0155202 @ danRer10
Intron Retention
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13111481-13113224:+
Coord C1 exon
chr21:13111481-13111593
Coord A exon
chr21:13111594-13113206
Coord C2 exon
chr21:13113207-13113224
Length
1613 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GGGATCATTTCTCTAATCAGGAC
3' ss Score
6.97
Exon sequences
Seq C1 exon
GAGCGAGAACTGGAGCTGCAGAAGGAGCAGCGCCGACAGGAAGAGAATGATAAACTCAGACAGGAGTTTGCTCAGCATGCTAATGCTTTCCACCAATGGCTGCAGGAGACCAG
Seq A exon
GTACAGGGGACCAGCATGCACTGCTCCGAGCGCTGTATTCTCTTAGCTTCATTACAGAGGGTTACACACACCGCATGCAACACATTTGATCGCACAGCATGACATCACACACACACACACACATCTGATTATATTTGATCGTTCTCTTCTGATCTCCATGTAACGGCATTTTTCATTCGTGTGTCAATCACTTTTGTTGTGATTGTAGTCTGCGCCTGCTTTGCCATGTTGTCTGTGTTGTGTGACTGTTTTCACAGCGATCACACAATTGAAACTCATCTGGGGCCTCATGTATCAACGCTGCGTACGCACAAAAACTTTGCGTACGCCAGGTTTCACGCTCAGAATCGCTCACGTTTGGATTTACTAACAATGAACTGAACGTGGGAATTTGCGCAGGTTCACGGCAGCTTTCTGGCAGGCGTACGCACATTTTTTGTGCGTGTCTGTTTTATTTCCATTGGCGACTCCTAGAGGCAGTTGTGTTAAATTCTTCTCTACAAAGTGTCTGATCCTTGCAATGGCGTCTGTATGAGACGGGTTCATATAGTAGGTATGTAAGATTTCCATACCATACAGTTGACCAGCTAAACATTAAAGCACAATTTTCAGCGGTCGCCTGTTTTCCCAATGTAATCTGAGCTATCTACTGCACACACATCGCTATAAAGACACTATCTGAAGATAAATTTGCATGCGTGAATCAGAAACATTTCCATTCAATAAATGTGCAAATAAAATATGATGCACAAACTTATTAATGATTCCTACTTGTCTTTCTCGTGATAAATAGTGGGCAAAATCTGATATGTAGCGGGAAAAAAAAGAAGAATGAATTCATCAGACGCTGGATTCGAGCCGAGTTTATGCTCGAACGTGTCAGTACATAATCATATGCTTCTTATGAGGTGCGCCACTGAGACTGCGAAGGGTACTGCAACATTTTACAGATATAAACCACACTATTTCTTTTTTAAATGCACTCAGTGCGATGTTCAGACCCAACTGTGTTAACCGTATCAGCTAAACTCTCCCACTCTATTTTTTTCTTTTGTTGTTAATTCCGGAGAACAAACTTGCAAATAACACCGTTTTCCTCCGGTCTACCTCCGAAAGCAGCATCTCCAATTCACATTCTGTTCAAAGTTTCTCTTTTTGCTTGATTTTGCCGTTGCTTTTTCGTTGGGTTTTGCCATTAGCATAGTCATTAGCATATTCATACGGGGGAGGAGGCAGGGAGGGGTTTTGTGCTCGTGCATGTTGCGCTCAGTTTCACGTTCATTCAGATGTACAAAAAAATATGCGTGAGATTCGGCGTACGCAGTGTTTCATACATCTGAATTTTTTTCTGCGTACGCACATTTACAGCTTTGTGCGTACGCAATGTTTTAGTAAGATTTCCACGCAAGTCTTCGTACATGAGGCCCCTGGTCTTGATATGCAGCAGATATGCTTTGCGCTGGTCACATGATGTGCTTTGTCATGTGATTGTTGAGTAGTGGCGCTAATGTCACGGCTCAATGTTTTAACTGTTTCTTTCTCTTTATTTGTCTCTCTCTTTCCCCGTTCCTTCACGCTGCTACCCCGATGCTTGGGATCATTTCTCTAATCAG
Seq C2 exon
GACATACCTTCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231:ENSDART00000102251:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
A:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
C2:
PF0043516=Spectrin=FE(20.7=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]