MmuEX6100132 @ mm10
Exon Skipping
Gene
ENSMUSG00000057738 | Sptan1
Description
spectrin alpha, non-erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:30027019-30029674:+
Coord C1 exon
chr2:30027019-30027131
Coord A exon
chr2:30027631-30027648
Coord C2 exon
chr2:30029620-30029674
Length
18 bp
Sequences
Splice sites
3' ss Seq
GGACACTTGGATCTCCATAGAAC
3' ss Score
4.42
5' ss Seq
CGGGTTAAT
5' ss Score
-0.89
Exon sequences
Seq C1 exon
GAACGAGAACTGGAGCTGCAGAAGGAACAGCGGCGGCAGGAGGAGAATGACAAGCTGCGCCAAGAATTTGCCCAGCATGCCAACGCCTTCCACCAGTGGATCCAGGAAACAAG
Seq A exon
AACGTATCTCCTCGACGG
Seq C2 exon
GTCCTGCATGGTGGAAGAGTCGGGAACTCTGGAATCTCAGCTTGAAGCTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'105-107,'105-103,106-107
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.000 C2=0.513
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
A:
PF0043516=Spectrin=FE(5.7=100)
C2:
PF0043516=Spectrin=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAGGAGAATGACAAGC
R:
AGTTCCCGACTCTTCCACCAT
Band lengths:
107-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types