MmuINT0151752 @ mm9
Intron Retention
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29883151-29885194:+
Coord C1 exon
chr2:29883151-29883168
Coord A exon
chr2:29883169-29885139
Coord C2 exon
chr2:29885140-29885194
Length
1971 bp
Sequences
Splice sites
5' ss Seq
CGGGTTAAT
5' ss Score
-0.89
3' ss Seq
TGTGCCTCTGTTGTGTTTAGGTC
3' ss Score
11.32
Exon sequences
Seq C1 exon
AACGTATCTCCTCGACGG
Seq A exon
GTTAATATTGCCTTCTTTTCCGGGCTCCTGGTGTGGTGGTGTCTTGTGTGCTTGTCCCTTTGTCCCTTGTCCCCAGTGGCCTGGCTTGCAAAAGATCCCAGGATGGGCCTCCTGTCCACCTTGTCCATTCCCATTGTCCCTGCTAGAAGAACCCATAGTGTTGGGGGGTAGGGGGTGTCACTTCCCCTCTTTCAAGGTAGGGACTGTAGCTGTGCTAGGAAGCCAGAGTCAAGTCTGAGGACCCTGTCCATGCCTGGTCACCAGAACTGGATTGCCTTTCCCTCTTTGCCTGTTTTCCCACGATGACAAAAAATGTACATTAAGCTCCAGAGGTCAGTGGGCATATGAAGTTGGATGGCTATCCTAGGAGCTTAGACTGAGGACAAGGTCCAGTTGAGGGGAAGTTCTGCAGCCCTCTTAGTTAGGACTAAGGTAGTCCTGCCTTCCCCTGGGGGAGGGTAGCCAGAATTGTTTACCCTAGAAAAAGGCAAATGCCCAGCATTACAAGGTTATAGAGACAGGGCTTGGAGGAGCCTCAGGAGGAGCAGGGCTGTCTCCCAGTCCCAGTAGGAGCCTGTCCATAAGCCATCCCCTATCCACTCATGCTACTAACTAGTCCAGACGAAGAGGCTTAACTAGAGCTTATGAGGTCTCGGGGGAAACTGAGGCATGTGAAGGAGTAGTGACCACAGAAATCTGCCCAAACCATTGAGACTGTAGGCTTTGCAAGGCGGGAAGGACTGCAGCATCTGGCCTGCCTACCACAGGCTTCCCCCACCCTATGCTGTCTGCTGCTCTTGCTCTTGTTTCTGTGCAGTGCCATGCTTCCTCACCTGTGGCTCCTCCCAAGCCTTGTCCCACCTGGCCCAGCACCCCTTGAGCTGCCCCTGGTTCCTACCCAGTGCCAGGCTGGCATCTACGGCACATGTCTGTCTCGATATGCTCTTGCCCCGCCTCCCTTTGGTGTATTCATTTGGTTTCTTCTCTTTGAATAGCATAGCATATCGTCGGGTCATTCGTGTCTGTCAGTATGAAGTTGGGGATGATCTGTCTGGAAGGTTCTTCTCCTCTTATTCTCTTCTTCCCTCACTGTGATTTTACCAATGCACTCTGGACTCCCAGGCGGCTCTGCTTTCTAACCCACACCCTAGCCACTTGGGAGGAGGGTCTGTCCCCCTCTGCTGCACTTGCCCTGCCTCCTGCCCCAGTCCCTGGGCTCCCTTTTCCTGGGGGACGGGGTGTGCCTGTGAGTCTTAACTACTACTGGGGTCGGAGGAAGCCTCATGCCTTGCCTTGCTAAAGCACTTTGAACTTGGGGAGATTTTAGAGCTCTTTCTGACGTACTCGAGTCACAAGGGTAGGTTTGGGTAGGCATGGGTGCAGAAGAGACCGGGCTGTGTGCACTGTGTGAACTTGTCCCTGCACGTGACCCATGACCCTGCTCGTTTGTTGTCTTCGTTCACTGGGAACTTCTTTGTACTCACACATCTTGGAGCAAGCTTCCCCCAAGGCCACCTGGCTCCTCAGAAGATGGCCTTCAAAGGGAAGTTCTACCATAGCTGTCCCCAGCTGGAATCAGCTGGCCGGCACACCCACTTAGCGATGTTATTGGCCCTGGTGTCTCTTCCCCTCAGTAGCCTAAGGGAACTAAAGTAGAGTTAAGGGGACTTAGAGGCCCAAGGGCTCCTATCTGTTGGGTTCTTGGCCTCCTGTGGCTGCAAAAAAGGGGGCTAGTCAGGCCTGAAGCTGCTTTGTTCTTATGGGAACAAATTCAGTGATCTTTAAGAGCTGAGAAGCCCTGGCCTTCTCTTTCTTGGGCCTGTTAGGAGGGGTGGCCAGCAACAGATAGGCCATTTCCTCAATGAAAAGAATTTCAGGATGTGGGCACTTTTTACCAGGACGAAGAGTTAAATATTGGCACTGGTCTCCAGAAATGAACTCCCCTGCTTACTGTGCCTCTGTTGTGTTTAG
Seq C2 exon
GTCCTGCATGGTGGAAGAGTCGGGAACTCTGGAATCTCAGCTTGAAGCTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-Spna2:NM_001177668:50
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.509
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(20.7=100)
A:
NA
C2:
PF0043516=Spectrin=FE(17.0=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: