MmuINT0152684 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:90250302-90252228:-
Coord C1 exon
chr16:90252120-90252228
Coord A exon
chr16:90250683-90252119
Coord C2 exon
chr16:90250302-90250682
Length
1437 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
ACTCTTCTTTAAAATGAAAGGTT
3' ss Score
3.06
Exon sequences
Seq C1 exon
TGGGTACCCTGGAGATGGCGTGCAGCAGCCAGCATACACACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATACAGCAGGATACGATGCACCATCAG
Seq A exon
GTACCGGCATTTTTCTTTTTCTTTTCTTTTTTTTCCATGTTTACATTTTATTCCTCTTTTGTTTGTTTGTTTGTTTATTGTTTATTTGAGACAGGGTTTTTCTGTATAGCCCCAGCTGTCCTGGAACTCCCGCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCCGGCTTCCTCTTTTATTTTTATTAGATATTTTCTTTATTTAGATTTCAAATGTTATCCCCTTTCCTGGTTTCCCCTCCGAAAATCCCCTATTCCCTCTCCCCTCCCCCTGCTCACCAAACTCCTGCTTCCTGGCCCTGGCATTCCCCTACACTGGGGCATAAAGCATTCACAGGACCAAGAGCCTCTCCTCCCATTGATGACCAACAAGGCCATCCTGGGCCATTTTTCTTGTACTGACCTTTTTGTACTTCTGAGCACTGCTGTTACTGCACAGTTTGTGAGGCGAGCTGCAGCTCCAGTGGAGGCTGTGAAGTGGCTACTGTCTTGAGTTGCTTTTGATTTCAGTTACAGGGTTAGAAACATGACATCTTCATCTAATAATAATAGGTGTTTTCGTTAAAATAATTTAATAACATTGACCTTGTAAAGAAACCTCCTAGTCACACAATGTTTCCTTTGCTAGAGTCTCTTTCCTGCATGCTGTGATGATTGGATACTATAGAGAGCTTTCCATTCTTAGTGTCAGTTGTGTTACTAGTCACACCAGAGGGTTACAGGAAATTCTGTAGCTTCGCTTTGCTATGAATGGAAGACCATTGTTTTTTTCTTTTGTACTTGTTTCTGAGATGACGCCTTGTGTGAGGATCTGTCTCCATTTGTAGATCAGCCTGACAACTCTGCTGTACACCATCATGCCTAGCAAACACGGGTTTTTGGTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCGTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCATGCCCGGCCCAGGTTTTTTTTTTTTTTAACGGAATCAAGAAACCACTTCTTGCAGCCATTTTTCCTTCTAAGATCGTAATTACTGTTAAAAAGTTGAAAGAAGACCATTTGCAATCAAGCACCTCCTTGGCTGAGGTTAGCTTGTCATTGTCACCTTGTACATAAAGCTGCACCTTAAATCACTGTTCAGAATTCTGGATGAGTTGCAGAACTTTCAAATATGTCATATTTGAATATGTAATGATGGTATAGAAACCGGGTAGCTTTTCTCAATTAAAATGTATTGAAGTTTTTCAAAACTATTTTTTGTTGCTGGTACTTAATAGATTTAACTCTTCTTTAAAATGAAAG
Seq C2 exon
GTTCCACTTCCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCTCCCATGCCTCAGCCGGGGATGCCGCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTACAATGCCACAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTGGGATGCCTCAGCCTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGATGGCTCAGCCTGGGGTTTCTCCAGCTCCACCAGTACAGCCAACTTTCCAATCAACTTTTCAGCCACAAAATGAACCCCATTCACAAAAACCACATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
-Srsf15:NM_178923:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGATACGATGCACCAT
R:
CTGTACTGGTGGAGCTGGAGA
Band lengths:
342-1779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: