GgaINT0115184 @ galGal4
Intron Retention
Gene
ENSGALG00000015850 | SCAF4
Description
splicing factor, arginine/serine-rich 15 [Source:RefSeq peptide;Acc:NP_001012840]
Coordinates
chr1:104011040-104011703:-
Coord C1 exon
chr1:104011595-104011703
Coord A exon
chr1:104011208-104011594
Coord C2 exon
chr1:104011040-104011207
Length
387 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
ATGTATTTTGTTCTTCTAAGGTC
3' ss Score
8.87
Exon sequences
Seq C1 exon
TGGATTTGCAGGAGAAGGTATACAACAGCCAGTATTTCCTCAGCTCCCAAATATGGATCCTTTTCAACAACGAATGATGGGAATGCAACAGGATCCAATGCGCCATCAG
Seq A exon
GTAACCTGAGGGTTTTTTTAGTTGCTTCTTCATCTGTTACGTCTTGTGCCTTGTCATTTCCTTTGATGAAGAGGGAAAGAAGTCGTGTTTCTGTTAGTGAAAAGTGAATATAACTTAATGGTCTGCTGTTCTGAAAAAGATAATTTTGTTGTCTGTTCTAGTCAAGCTTTGGAGAATTTGAGATATATATATATATATCTCAATATAAAATATATATACATGTATTTTAAAAAATATATATAATTGCTTGACCTGCTTCATCTTTCTCAGGCTTCTGATCTTCCGTTGTGACTTTAGAGCAGAGAGACAGTTCTACTTCTAGCAGACTAGAAAAGCTAATATAATTTTTTTCTAACTGGAGGTTTTCATGTATTTTGTTCTTCTAAG
Seq C2 exon
GTCCCACTTCCTCCTAATGGACAAATGCCAGGTTTTGGTCTCCTTCCTACCCCTCAGTTTCCACCCATGGCTCAGCCTGTGATTCCACCAACAGCTCCTGTGCAGCAAACTTTTCAGACTCCTTTCCCAGTGCAGAGTGAATCACACATGCAAAAAACACATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850:ENSGALT00000025555:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTTGCAGGAGAAGGTATACA
R:
TTGCATGTGTGATTCACTCTGC
Band lengths:
262-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]