DreINT0131098 @ danRer10
Intron Retention
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48851268-48853780:+
Coord C1 exon
chr17:48851268-48851388
Coord A exon
chr17:48851389-48853648
Coord C2 exon
chr17:48853649-48853780
Length
2260 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TGCACCATTTATTTGGACAGTCT
3' ss Score
4.21
Exon sequences
Seq C1 exon
ACCTGTGCTGTCAGATTCCATCAACAGCTCAATATTTCATCAGCTGGCGGAGCATCTTCAGCAGCAAAACCTCGAGCAGTTTCAGAAACAGCTAATGGAGCACCAACAGCATCAACAGAAG
Seq A exon
GTACAAACAAACAGACTATGATTATTAGAGGTGTGAACCTATACTGGTCTCACGGTTCGGTTACGATTATCATGCCTTCGATTCGGTTCAATTCGATATCTTGGTGCATCACGGTGCATTGATGATACTTTCCATATACAGTGTTATCTTTTAGGGAGGAGGCTATAACAAGCTGTCTGTATAAACACAGACACACAGCACCACACTGTCTCTCATTTAAACACATACACAAACACAAACATAGACAGCACCACACACACACACACACGCACTTAAGACCTCGCAACGGAGAGCTCGCGTTGAACGGAGCAGAAAAACAAAAAAAAGAAGCTCTTTTCCGACAGTCCCTTACTGAGAGCTCCTCTCAGCGCGAGCTCTCCCGGCTAAAGTAAACACATATTGTGAGGGCTTAAACGGAGCAGTGCTCGTAATGTCAAGCAAAAAAAAGAAAGACAGCTGTGAAACATAACCAGCTTTGTCTTTTTGTAGGAAACACACTTTAGATCTTTTTAGGGTAAGAGGTTTTTGAGTTATTGCCGTCTATAACTGAATGTGTGTCAGGCATATCAAAACAAAACCAACTGAACCGCGCTCATTTCTGGCGCCCCCCTGGATATACAGCGCCCTTAGCATTTGCCTATGGTGCCTATGCCACGGGCAGGCGCTGGTTGGCTGAGTGTTGTAAATACTCGCGCTCACCTCCCTCGCGACAGAGCGCATAGGAGATAAATGACGTCAGTACATAATAACCGGTTAAGGTTATTACTGAAGCGATACCGAATTGTCCGCGTCTGCATCGCGGTGCACCGAAGAAACGCTTAATTTTGACACCCCTAATGATTATCTAACCTAGTTTTTAATTAATATATAAGGACACACAAATCTGATGTTCAGTATTGAATGCACTTTAACACTATTTGTTTTGTTTTTTCTTGATAAGAGGCAATAAGAACATTGTAAAGCACCATATATTCCAAGTTCTGAAGCACTTAGAAAGCTTTTTTTAATGGCAGTCAAATGTTCAAACAGGCCATTTCTGTTATTTTATTTTATTTTTAAAGTTTGTTTGACAGGGACAATGCATATCGATAATACCAAAATATAATATCCAAAAGACCACTATAAAATCTGCAATCCCTGGACATGTGGTAAAACTGTTTATTAAATTAATATTCAATAAAGTAGTTAAATGTGTTCTAATTATTCTATTGCTGCTCTATTTTAGCTAAAAAAACACTACTTTTTTGGGTTTGGTATCATCCAATTCCAGAATTTGTGTATTTGATCTTTTATGGTATAATGCAGTGGTGTCAAATCCAAACTTGGTAAGGGCCGCACTGAGTGTTGTGAATAAAGTCAGGGGCCGTACATATACATTCTGTAAATGTTTTTATTAAAGAAAATTAAAGTGTATTAACAACTTTATAACATCTCTATAACACTTCATTAAACCACATTTATCAAAATAGCATGGTTTCCCGTTTAATTCTAATTTGGTCCAAATTTGTGTCACAGCAGGTTTTATCTCTATCAAAACATGAAGTATAGTCTCTAACCAATATAAGCATAAAACAGTACAGTAGGAGGGAAACTGTTAAACAAAACATTTAAGAGGGAAAAAAAAGCAATATATTTATTAGTAGGCTATTATAGATAAATGGTGGCCTATGTAAAAAATAAATGGTCAGAAATTGTATTATATAGATTATTTTGCTCCAAAAGGACACTTGCATTAGGCTTATATGTCAAACCTATGAAAATTCGGGATTTTTAACTTACCAGACACCCTGCATCTTTTCATAGAAACAATCTCATCTATTTTAGGTGTAATTTCCCTTGCCATGGCTAATATCATTACAGACATAATATGGTGGTTTGTGAGGCGGGATCCGTGGGATGTTATGGTCAGCTGCATTATAGAGAACATTTGTTTGCATGAGTATGTGCTCCTAAACATTGACATGACGTGTGCATCGTAAAAGAGAGTAGGGTGAAGTGCAACAGCACCCCCTGTGTCTCATTATTGTAATTGTCACAGACTTATATTTAAAGCGAGTGCGGGCCACTTGAACTTCATTACCAAAACCTGTTGTCGGGCCTGATTAAATGTTTTGACGGGCCGCATTTGGCCCGCGGGCCTTGTAATTGACACGTGGTATAATGGATTATGATGGTGTTGAATTTCTATTAATGTAATGTAAATGTAAATGTAATGTAATGTGTATTTAATGTGTATTTAATGCACCATTTATTTGGACAG
Seq C2 exon
TCTATGAGCATGGAGAGCCAGGACGCTATTTTTGGCACTGAAAATTCTGCCCCATCTGGCCAGAGCAGCGCCCCGTCACAGCACCAAGTTCAAGAATCAAAAATGGATGATTCCATGGACAACCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056:ENSDART00000161898:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064956=Transformer=PU(5.0=15.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]