GgaINT0081291 @ galGal3
Intron Retention
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52242609-52245304:+
Coord C1 exon
chr3:52242609-52242726
Coord A exon
chr3:52242727-52245172
Coord C2 exon
chr3:52245173-52245304
Length
2446 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TATAATTATCTGCTATTTAGGCA
3' ss Score
6.15
Exon sequences
Seq C1 exon
GCCTTTAGTACCAGAATCTGTGAACAACTCACTTTTTCACCAACTAGCTGAACAACTGCAGCAACAAAATTTAGAACATCTCAGACAACAACTTCTGGAGCAACAGCAGCCTCAAAAG
Seq A exon
GTAAGAACTCCATCTTGTGGTTGTCATCTAGCAGAAACTTGCAGAGTAAATGGAATGAGCAGTAGAAAATGCATCAAGCAGAAAAATAAATACAACCAAATGTGTGGGGTATATGTTTTGCTTCTCTTAGGAAAATGAGTGCCCTTCAGCTGAGTTACAGACTGACTGTGCTTTGACTGTTCGGCTTGCTTTACTGGAAAAAAAAGTTGGTTTCTTTTTTCCTGCTGTCGTGAAGGAGGAAATGAGCCCTGAAGTTGAATATGCTACTGTCTGTGCAGAGAGAGCAGTGTACAAGCTGCTGCTATGGAACTACAAAAGGATAGAATACTAGATTGCACTGTAACCTAAATTTTCCCCTTCTAGGCTTTAAATATTGACAATAAATGTATTATTCTACTAAAGAATGTAAACTAAAGAATAGTGTCAGGTGTTTCCTGTGAAGTTCTTAGTTAAGAATAGATGCTTGAGATATTGCTAGATTGCTTAACTGTGTAAACTGAGTCTTCTCTACAACAAAGTAAATTGGCTTGTTTCTTCTGAGGTTATTCTGTTGAGTTGCTCTCCTCCCATCCTGATGTTAATTTACTGATCTGATTAGAAAATAAAATGGTTATTCTGTCTCTATGCTGGCAAGATATAAAGTGGATTTGCTATAGGGTATTTGAATCAGTTTATCAGTAAAATGGAAATTTCTGTATATTGAATGAAAATCACAACAATCTGTTGGGGACTTTATTTTAACATGTGCAAAGGTGCAATCCTCAGCTTTCAATCAAAAATGTCTGTAGGAATTTTGAATTTGTGACTTGGAGTTTTCAGTTGTATAGAAAAATAAAAGTTTTTGCTAGATTTTATTTTTATTTTACTATGTATTATTGTCATATCTTATTTAACTATAGTAACAGGAAGTTTGTACAACGTAGCTACATATTAAATAGTTTTTGATGTAAATGAATGCAATTTCTGGCTTAAACTCTGTATAGATTGTTGTACAGAAATATAACTTTGAAAGGTGAATCTGTTTCAGGAGCTTTTGATCTGACTTATCTAAAAACTATTAAGAATATGTAATTGAAATAAAAGGCTAAATGACATACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGACTTATCTAAAAATAGCTAATAATATGTAATTTGAAATAAAAGGCTAAATGACATACCTTATTGTAAAACAAACTATCAAAAAAAAAAAAGGCAGAATTAGATGTTAAATTAGATTCCATTTATGAAATTAAGTTACATTACATATATGGGTAGAGAGTTCATATGACTCATCCCCCATTATTTGATCTTCTATTCCAAATGGTTTTACAGAAATTATTTCCCTTCAGGTCCACTCGGCTTCTTGATTACTTGGTACATAGAATAAGTTTAATGTTCACCTTGATAGCAGCTAAAAGATATAAGCTTCTACTGGACCTCCTCAGGACTGACTGCAGTGTGTTACAAGGAATATTTTCCTTAATTCCATTCTTAAGCATCAATGAGAAAGATAAGGGAAAGAGGAAGAAAATAAAACGCAAACCAAAAGTATTAAACATCTAATTAGGAGCAGAGGGGGGAGGAGGAGAAGATAGAGGAGAGACAGAAGGAGCAACAAGAGATGTGGGAACTGATACCAAGAAACAGAGATTATAGAGAAATAATTAAATATATGGAAAATGAAGTAGATAATATTATTAGAAGACAAAAACATTAAATGAGTTGTAAATACTAGTTATCAAAGTTGTCGATTACTTTTTTGAATATTTTCATTTTATTTCCTGTATTCCTTGCATTTGTTTTCTGCCCAAAGGTATTTATTCTAAATCTATGCTTCAGTATTTCTCAGTAGAAAATTACCTGAAATGAATGAAAAGGAAGAAAATAAAAGAAAGTAGATTAATTGTTTTGGAGAAATATTTGAACAACTGTCTCATGTAGTCTTGATTTTTGACACAGTAAACAGTTTCAATTATGAGGCTTCTGACGATTTATAATTATCTGCTATTTAG
Seq C2 exon
GCAAGCCCTGAGGAAAATCAGGAAGGGAATTTTGGTTCAGAGCACTCTGCATCACCATCACAAGGGAGCAGTCAACAGCAGTTTTTAGAAGCAGAAACAAATGTAGATGATTCAATGGATATTCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635:ENSGALT00000022182:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]