Special

MmuINT0158277 @ mm10

Intron Retention

Gene
Description
T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 [Source:MGI Symbol;Acc:MGI:1350931]
Coordinates
chr19:3897468-3897876:-
Coord C1 exon
chr19:3897758-3897876
Coord A exon
chr19:3897682-3897757
Coord C2 exon
chr19:3897468-3897681
Length
76 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGC
5' ss Score
4
3' ss Seq
TGACCTGTCTGTTCCCACAGGCA
3' ss Score
12.32
Exon sequences
Seq C1 exon
ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT
Seq A exon
GTGAGCTAAGGGTTGCCAGTGGGTGTGGGCAGTGTCTTTGTGGGTCTAGGGTGCTCTGACCTGTCTGTTCCCACAG
Seq C2 exon
GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001750:ENSMUST00000001801:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(8.8=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAACCACCTGAGCTTTCT
R:
GTAGCCAAAGAGACCCAGCAG
Band lengths:
181-257
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types