BtaINT0146278 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000292 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr29:46221086-46221512:+
Coord C1 exon
chr29:46221086-46221204
Coord A exon
chr29:46221205-46221298
Coord C2 exon
chr29:46221299-46221512
Length
94 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGG
5' ss Score
4.04
3' ss Seq
CGCCCCCGTCCCTGCCCTAGGCA
3' ss Score
9.63
Exon sequences
Seq C1 exon
GTCTGGAGCCTGGCCGTCAACCACCTGAGCTTCCTCAACTCCTTCAAGATGAAGATGTCCATCATCCTGGGGGTCACCCACATGACCTTTGGGGTGGTCCTGGGAGTCTTCAACCACGT
Seq A exon
GTGAGGGCTGGGGTCCTGGGGTTGAGGGGCTGAGCAGGGCCAGAGTGGCCTGGTGACCCGGCTCCCCACTACTTCGCCCCCGTCCCTGCCCTAG
Seq C2 exon
GCACTTCGGCCAGTGGCACCGGCTGCTGCTGGAGACCCTCCCCGAGCTGGTCTTCCTGCTGGGGCTGTTCGGCTACCTGGTCTTCCTGGTCGTCTACAAGTGGCTGAGCTTCACGGCCGCCAGCGCTGCCACAGCCCCCAGCATCCTGATCCACTTCATCAACATGTTCCTCTTCTCGCGCAGCCGCACCAACAAGCCGCTCTTCCAGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000292:ENSBTAT00000000367:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.6=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCATCATCCTGGGGGTC
R:
GCTCAGCCACTTGTAGACGAC
Band lengths:
174-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]