DreINT0161358 @ danRer10
Intron Retention
Gene
ENSDARG00000105142 | tcirg1b
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3b [Source:ZFIN;Acc:ZDB-GENE-040426-2022]
Coordinates
chr14:16488395-16490389:-
Coord C1 exon
chr14:16490271-16490389
Coord A exon
chr14:16488609-16490270
Coord C2 exon
chr14:16488395-16488608
Length
1662 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTTTTCCTTCAACTGCGTAGACA
3' ss Score
5.81
Exon sequences
Seq C1 exon
ATTTGGGGTCTGGCCAATAATCACCTGACGTTCCTCAACAGCTATAAGATGAAGATGTCTGTCATTATTGGAGTCATCCATATGACCTTTGGTGTGTGTTTGTCTTTCTTCAACTACAT
Seq A exon
GTGAGTATGTTTTTACGGTTTTAAAGTGATCTTCAACTGCATTTTATGTTGTCGTGTTTCTTAAGCTGTTACAGAAAACTTTAGAAATAATATATACATATAACGTTGTATAATATAGTAATATTGCTGTACATATTCAGTTCAATTCACCTTTAACTGTATAGCGCTTTTACAATGTAGATTGTGTCAAAGCAGCTTCACATAAAAGGTCAACATACACTTATCAATTTGTATAATGCATTCACTACTTCTATTTTTAAAATATATTTATTTGCTTTTTTCTCTGTAACTCTGTCGCACTGTAGAAGTTCTGTCATGAAAACTAACTCCTCGTATGTGTGAACATACCTGGAAATAAGGCTCTTATAAAACAAACTCAGTCCTGGAGGGCTGGTGTCCTGCATATATTAGTTACAACCCCAAATAAACACACCTGAACCAGCTAATCAAGCTCTTTCTAGGTGTACTATAGCTTTGGGGGACTTGCCTCCACATGCAATGTCTGCTCCCACTAACTTTATCTCAGATCTTGTAAAAAATGTACTTAAATACTAAACATTCAAGTTGACACTAGAATAACATGCTTCTTGAATAACTCAATTTTAAATAAGATTAAGTAGGCTCATGGAAAACTTAATATAAAAAGTGTTCACATATCTTTTGAGAGCTTGTTAATTGAGATGTAGAACATATGGAAAGCGGCTGCATAGAGAGAGACACTGCACGCGCTGATGAAGATTTAAGATGAAGCATTTCCTGTTGTTCACATCTTTATGTCCGTTAACGCTAGAAACTTTGCATGTAATAGATACATTTTATGAAATACAAATACTTACAGTTTGTCGCTTACAATCCAGAGCTTTGGCGGTTGGAGGAGTTTTTAGCCAAATCCAGCACTGAACAGAGAGATTCTGGAAGCTATCTTTTGTCAAAGCTAGCTATATGTTTTTTTTTTTTTTTTTTTATAATTCTCTGGAACATAAATAAAATTAGATTGTAGGCACTTCTGTCTTTGTGTCATGTCCTTTGGAAGCCCAAATACAGAAACGGAGCCAGCTCTGTGAAAATAGCAGTGTTTGGACGGCATATTAGCTTTCTCTGTCATATTATAGCACTACAGTGCCTCTGGCAATGCTCGTAACATGAAGGGTTCATGATCTCATTAACCCAGATGTTTTTTTGTAGTCCCCAAACTTTGTTCGCTGTAGGCTTTGCTTAGCTAACTCTGTAAAAGCCAATGTCTCCCTTTGCACTGAACTTAGAGCATTCAGAGATGTTATGTTCACACAGCAACATCGCACATTAACTTAACATGAAGTATAAAATATGATATCGTAGTGGACTTTCCCTTTAAACATTAACCGTAACATTAATGGCACAGCTTTTTAAATGAACTGCACGATACACATGCACCAAACTATTAACAAACAAGCAAAACTATTAACAAAATTAATCAAAGCACAGTTTGAAATACCTATAACTTATTAATTGAATAATCTTTTTAACTCTTCATCTTCACGTGCGCATCTATCTATCCAAACCCACGTCAGGAAAGACACGTCATTCCATTCCTAAAATGTTCTTTTGCATTGCCATTTAAACCATGATTGATATAAATCTGTCCGTATTCACTATTTCTTCTCTTTTCCTTCAACTGCGTAG
Seq C2 exon
ACATTTCCGAGAGGTCAGCAGTGTGTTTCTGGTATTGATCCCGGAGTTGTGCTTTATGTTGTGTCTGTTTGGATACCTGATCTTCATGGTGATTTATAAGTGGCTGGTCTATGGTCCTGTGAATTCTGACTCTGCTCCCAGCATCCTCATCCACTTCATAGACATGTTCCTGTTTACTGAGAACAAGGATAACAAACCACTCTACACAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105142:ENSDART00000170758:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.1=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTCTGGCCAATAATCACC
R:
GGCCTGTGTAGAGTGGTTTGT
Band lengths:
327-1989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]