RnoINT0148866 @ rn6
Intron Retention
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219129174-219129586:-
Coord C1 exon
chr1:219129468-219129586
Coord A exon
chr1:219129388-219129467
Coord C2 exon
chr1:219129174-219129387
Length
80 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGC
5' ss Score
2.62
3' ss Seq
TCTGACCTCTGTTCCCACAGGCA
3' ss Score
11.41
Exon sequences
Seq C1 exon
ATCTGGAGCCTGGCCACCAACCACCTGAGCTTCCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACACACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCATGT
Seq A exon
GTGAGCTAAGGGTGCCAGTGAGCTAAGGGTGTGGGCAGTGTCCTTGTGGGTCCAGGCTGCTCTGACCTCTGTTCCCACAG
Seq C2 exon
GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCGTGCCTGAGCTCATCTTCCTGTTGGGCCTCTTTGGCTACCTTGTTTTCCTCATTGTCTACAAGTGGCTCTACGTCTCAGCTGCCAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCGGCTGCTCTTCCACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220:ENSRNOT00000023425:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCTGAGCTTCCTCAACT
R:
CCAAAGAGGCCCAACAGGAAG
Band lengths:
172-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]