DreINT0161339 @ danRer10
Intron Retention
Gene
ENSDARG00000016835 | tcirg1a
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3a [Source:ZFIN;Acc:ZDB-GENE-090311-31]
Coordinates
chr1:44183497-44183923:-
Coord C1 exon
chr1:44183805-44183923
Coord A exon
chr1:44183711-44183804
Coord C2 exon
chr1:44183497-44183710
Length
94 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGC
5' ss Score
5.61
3' ss Seq
ACTCTTTTTTTTTTTTTCAGGTA
3' ss Score
12.75
Exon sequences
Seq C1 exon
ATCTGGAGTCTTGCCAATAACCACCTCACCTTCCTCAATTCCTACAAGATGAAGATGTCTGTGATCATCGGGGTCATCCACATGACGTTCGGGGTCTGCTTATCCTTCTTTAACTACAT
Seq A exon
GTAAGCCATCATATGTCTGGTTTTCTCTGGTTTTAATGATCTGCAGTGTGTTTATTTAGTATACCTATCCATGAACTCTTTTTTTTTTTTTCAG
Seq C2 exon
GTACTTTGGGAACGTGAGCAGTGTGTTCCTGGTGTTGATTCCTGAGTTAGTGTTCATGTTGTGTCTTTTCGGGTACCTGGTCTTCATGGTGGTGTTTAAATGGATTGCGTTTGGACCTCAGGATTCAGACCGTGCTCCCAGCATACTGATCCACTTCATTGACATGTTCCTGTTCTCCGAGAATCCAAGCAACCCACCACTTTATCCTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016835:ENSDART00000145354:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGGGGTCATCCACATGA
R:
CTGAGGTCCAAACGCAATCCA
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]