MmuINT0159264 @ mm9
Intron Retention
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96195384-96198189:+
Coord C1 exon
chr9:96195384-96195546
Coord A exon
chr9:96195547-96198042
Coord C2 exon
chr9:96198043-96198189
Length
2496 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
TTAATAAAAACATTTTTTAGCAG
3' ss Score
3.27
Exon sequences
Seq C1 exon
TAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGCTTGAGACATTTTTCAATGAAGGTGTGTGAGAAAGTTCAGCGGAAAGGCACAACGTCATACAATGAGGTAGCTGATGAGCTGGTATCTGAGTTTACCAACTCAAATAACCATCTGGCAGCTGATTCG
Seq A exon
GTAAGTGGATCATGGATTATGCACAGAGTGTGAGTCCTGTGTCCAGTATATCTATTGGTTTATATCATAGATGTGAGGAATCTGGACACTTGGAAATCCTTTAAGTGAGAATTCCCTATTTATTTGTATGTTTGTGTATGTGATATTTGTGGGCACATGCATACCATGACAGAGGACAATTGTAGAGGTCAGAGGACAATGTTGTGAGATCAGCCTCCTCCTTCCACCTTCACCTGAGTTCATCAGGAGCACATGGGAAATGCTTTACCCTGCTGGTGAGTGTCAGTAGCCCACAAAGATAAACTTTTTTGTTTTTTCGAGTCAAGATTTCTCTGTTTAGTCTTGGCTATCCTGGAACTTGCTTTGTAGACTAGGCTAGCCTTAAACTCAGAGATCTGCCTGCCTCTGCCTCCTAAGTGCTGGGATTAAAGGTGTGTGCTACCACTGTCCGACTCTGGCAATATTTTAAAATATAATATTGAGGTCATGTAAATTTTGGGGCACTTAGGAGATTGAAGCCAGCTTACAGTATAATGAGCATAAGGCTAACCTGGGCTACATAGTGAGACTCCCCTCCCCTTCACACACACACTGCCATGTCAAATAAACAAAAATAGAAAAGTTCAGAATCCTAGGATTTTACCCAGAAAATAATGTTAAATGAACCCTATAATACAATAAAATACAATATTTATATTCAGTTCCATAATTTAAACTTTTTATTGATTTAGATTTCATTTTATATTTCAATGGGCTCAGTGGTCCCCACTATCCTTTATTATCACATTTAATTGATTTGTTTTGTTGTTAAGAACTTCCTATGTACAACAAGATAAGAACCTCATGATACAAATCACTGTAAATTTATTCATTCAATAAAGTCTTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTTACTGCTCTTCCAGAGGACCTGAGTTCAGCAACCAGCAACCACGTGGTGTCTCACAACCATCTGTAATGGAATCCAATGCCCTCTTGTGTGTTTGTTTGTTTATAGATAGGGTCTCAGTTTGCATATCTGACTGGCCTGGAATCACCGAGCAGACCAGACTGCCCTTGAACTCATAGAGCACCACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGACATAGTTTCATTCCTGTCAAGTGCTGGGATGAAAGACAGTACCATTCCTGACATCCTCACATGAGCCTGCGTTTCTCACTAGACTTGAAGCCTAATGATTGGCTAGCTTGGGAGGCCAGTGAACACCTAGGGTCTATATGTCTTCACCCGCCCTTGTATTGGGGCTGCAGATGCAAACTCTTACATGGGCAATAGGGATCCAGACGCAGGTTCTCGCAAGCACTTACCTACTCAGCCATCTCCCTAGCCCCTGGTGGTTTTAACGTATAAAATTCTTCCAAATAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAGCCACCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATAAATCTTTAAAAAAAAAATTCTTCCTAATAATGCAGGCACTTTGAATACTTTACCTCTCTATGTGTACATTTGTTATAGATATTAATTTTTATATATCTTGAATTTCTTTTTTTTTAAAGATTTATTTATTTTATTTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCCGATCCCATTACAGATGGTTGTGAGTCATCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCGGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCCCTATCTTGGACTTCTTAAAAGAACTTTTTATGCAGCTGAAACTTACCTACATCTTTATGTTTTCTACCTCTCCAAGCTTCCATTTTTAGTCCTCCTCTCCCACCCAAGAAAACCCTGTAGTTTTTTGTCAGTGTAGTGGTAGTATAATGTTTGTTTCTGAGGTTGTTTGTGTTAAAGGTGGCTTCAGTGCTGGAGCTATAACCAGTGGTAGAACACTCTTTTAGCATGCATGAGGCCCGTGGTTCAACCCTCAGAACAATCTGAAAAATAGATAGACAAATAAATGAAAAGTGTCTTCAGAGCAGCTTAGATGCCTAAGCTGACAAAGCATTTTCTAGCAAGCCTGATGGCCTGAGGTCAGTCGCAGGGTTCGTGCGATGGGAAAGACATTGGGCTTCCTTCCACAAGTGCTCCTTGGAACTCTACAGAGACAATATAGCAAGAACACACACAAGTAAAGATGTATAAAAAAAAGTTTACAAGTGTCTTAGTTACATATTACATTCTGAAGATGCTTTCACTGGGCATAGAATTTTTTCCATACTTGGGAGATACTATTATTAATATCAACAGCATGTGAAAGATAACCTTTAAAATTCACCACTTAATAAAAACATTTTTTAG
Seq C2 exon
CAGGCTTATGATCAGAAGAACATTAGACGAAGAGTTTATGATGCTTTAAATGTACTAATGGCGATGAACATAATTTCAAAGGAAAAAAAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGCTCAGGAATGCCAGAACCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411-Tfdp2:NM_001184711:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
NA
C2:
PF0231915=E2F_TDP=PD(42.2=71.4),PF087815=DP=PU(4.2=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: