HsaINT0166146 @ hg38
Intron Retention
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]
Coordinates
chr3:141974048-141978682:-
Coord C1 exon
chr3:141978520-141978682
Coord A exon
chr3:141974192-141978519
Coord C2 exon
chr3:141974048-141974191
Length
4328 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGT
5' ss Score
9.22
3' ss Seq
GTGAAAATATTTTTTAGCAGGCT
3' ss Score
3.43
Exon sequences
Seq C1 exon
TAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGCTTGAGACACTTTTCAATGAAAGTGTGTGAGAAAGTTCAACGAAAAGGTACAACATCGTACAATGAAGTCGCTGATGAGCTGGTGTCAGAGTTCACCAATTCAAATAACCATTTGGCTGCTGATTCG
Seq A exon
GTATGTAAATCATGAACCTGACATTGATTTTGATGGATGATGCTACTTCTTTGTGTTATCTTTGTTATAGATTTGAGGAATCACGACTATACTTGAGGGTTTTATCCTTTATTTTGGGGGATTTTTTGTTGTTGTTGAGTTTTATTTTGGAGGGAATTCCTTTTTTTTTGTTTTTTAGGCGGAACCTCACTCTGTCGCCCAGGCTGGAGTTCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCTATTCTTGTGACTCAGCCTCCCGCGTAGCTGGGATTACAGGCGCACACCACCATTCCCAGCCAATTTTTGTATTTTTAGTAGAGACAGTGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTTCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTACCCAGCCTTAGTTGTTTTTTTTGTTTTTTTTTGTTTTTTTTTAACATTTAAAAAATATTTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGTCTGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACTGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCATGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTAAGCCAAGATCGCACCACTGTACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAGAAAAAAAAAATTGGTCGCCTATCCAATAATTTTTTATTGTTTCTGAATCTTATTGTTTCTTCAATGTCTAAGTCAACAAGAAAATTTTATTTTTAATTGGAAAAGGAATACATAAATATGTTTATAAAAAATTCAGTTGTCTGGCAGAGTCTCAAATAAATGGAATACAGTGGTGCAGTTTCGGCTCAATGAAACCTCTACTTCCCAGGTTCAAGTGATGCTTGTGCCTCAGCATCCTGAGTAGCTGGGACCAAAAATGGCAAGGCTCTGCCTCTACAGAAAAAAAATTTATTTCTTTATCTTTTTTTTTTTTTTTTGATATGAGGTCTCACTATGTTGCCCAGGCTGATTTTGAACTCCTTGACTCAAGTGATCCTCCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCTGACCTCTACAAAAAGTTTTTTTTTTTAAATTAGCGAGGTGCAGTGGCACAAACCTGTAGTCCCAGCTACTCCAGAGGCTGAGGAGGATTGCTTGAGCCCAGGAATTCAATCATGCCACTGCATTCCAGCCTGGGCGGCAAAGCAAGACTTCGTCTCTTTGGGGGGAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATGGCTATGACTGTTTCTCTAGAGCACTGATTTAGCCCTATCCTATTGATTCTGATATATTATTCTTTAGATGTTCTTTAATTTTGGTTTTAATTTGTTCTTTGACCTAAGGATTGCCTTAGAAAGAGTTCTTATAGTTCCAAGTTTTGTTTGTTGCTTTAAAGTTTTACTTTTATTACTTAATTTGTCCAGAGAATATGATTTGAACTATTTCCCTTTTTTTTTTGGATTACATTGAGATTTTCCTTGGGAGCCATTATATGTGATTTTCTTTTTCTTTTCATGTTCTCTAGGCACTTGAAAAAAAAAGTCTATAGCATTCTGTTTCTGAGTGAAAGCCATGGTTCTCACAATGATCTGCAAGCCCCTTTGTGAGCTTGCCCACCATTACCTCACTAATCTCGTCTTCTGCTATGCACTGTCTCATTTACTACCCTCCAGCCACATGTCACTATGCTCCAGCTACATGTTTTGTCCCTGATCAGGCCATTACACTGCTTTGCCTAGAGCAGTCTTTGCTAGGTATTCATATGGCTTCTCTCTCCCTGCCTTGTGATCTTCACTCACCTGTCACCACAATGAAGCATTTCTTCTTAGCACTTTTCAATATCTAAAATACATTTTTACTAATACCCTATCACCACCACCTTCCCAGGATATAAACAAAGGTTGAGTTTTTTTCTCTTTATTCACTGCTTTGTTATTTTTCTGATAATTTAGAATGCTTGTAGTCTCAGTTCTTCAGTTGGTTACCTTTATAACTTAAGTTCCTTGAGTTACCACCTGTAGACAGTATCTATTGGTTATGAAGAAAAACATATGTTTTTTTCTGTCTTCCATTTTTCTCTTCTACCATGGGACTCAGATTAGATATATTAGTATATTTGTTAAAAAGAATAATACTACTACTATAGGCCGGGTGCAGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGACGGATCACACTGTCAGGAGTTGGAGACCAGCCTGGCCAACATGATGAAACCCTGTCTGTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGTGGGCGCCTGTAATCCCAACTACTCGGGAGGCTGAGGCTGGAGAATCACTGGAACCCAGAAGGTGGAGGTTGCAGTGAGCTGAGATCTCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCGGAAAAATAGTTGTTTTTATTACTTTAAATAAATAGATTGTGCTGAACCCTTTATTATTATTTAATCTGCTTTGAACAACATCCATATCCCTTCCAATATCAAAAAGAGGAAATTGGCATACCTATCACATTGCCTCCTCCCAGTACTTGTTGTTACAGTATCATTGTTTCTACAGGGTCAAGATTTCTTTTTTTTTTTTTTTTTGAGACAGAGTCTAGCTCTGTCACCCAGACTGGAGTGCAGTGGCTCAATCTTGGCTCACTGCAACCTCCATCTCCCGGATTCAAGCGATTTTCCTGCCTCATCCTCCTGAGTAGCTGGCATTACAGTCATGCGCCACCACGCCCAGTTAAGTTTTGTATTTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCACCTTGGCCTCTCAAAGTGGTGGGATTACAGGCATGAGCCACCACTCCTGGCCCATTGTCAAGATTTCTAGTATTTACATTCAGTTCTATAACTTAAATCCCCCACTTATTTAGATCTAGTTTTATATTTAGGTGGATTCAGTGTTCTCCACCATCCTTTATTATCGTTGCATTTCCTGAGGACCTTGTTCCACAATGTAAACCAACATGGTTTCCTTGATTAAGTCTTACTATCAAAAAATAGAAGAAAAAGGCCGGGCATGGTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGTCGAGGCAGGCAGATCATGAGGTCAGGAGTTCAAGATCAGCCTGGCCAATATGGTGAAACCCCGTCTCTACTAAAAATAGAAAAATTAGCTGGGCGTGGTGATGTGCATCTATAGTGCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGTGTGGGCGAGAGAGCGAGACACTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAAAATGGTCAGCTGAACTGAACAGTGTCCCTTGTCATATAGAGGATTATATTTTGGTACAAGTTCCTAGTCCCATTGTAGATTGGAGACAGTTTGCAGATCAGCAGTGGTCAAGGAACACATTTTGAGAAGCACAGTTTTACCCAGAACTTGAATAAATGTCCTTGATTTTTTTAAGTCTAAAATCCTCCCAGATAATGCAAGGGCTTAGAACACTTTACCTCCAATACCTTTTTCTGTTAATATGTATACTATTTGTTGTCATGTATATTAAGTTCTGTATTCTAGACTCCATAAGGCATTATTATTGTTTTATACAGTGAAAATTGAGATTTACCCACATATTTACTTTTTTGGGTTGGTCTTCATTCTATCCTACATACCTAAGCTCCCATCTTAGATGATATTTCTTCTACCTGAAGAAATCCCTTTAGTATATTTCAGTGTAGATCTGCAGGTAACATGATCTTTATTTTTAAGATTATTTTGTTTTATATTGTTTGAAAGTATTTTTATTTCATCTTTAATTTTGAAGGATATTTTCTCGGAATATAGAATTCTTTTGGATGTTTTTGTCAGTTGGCTAAATAAAAAAATAGAATCCTTCCAGCACTTTGAAGTTGTAATATTAATTTGATATATTCATATCATGTGACTGTATCTTAACCCTTAAGATTTATCACTCAGTGAAAATATTTTTTAGCAG
Seq C2 exon
GCTTATGATCAGAAGAACATTAGGCGAAGAGTTTATGATGCTTTAAATGTGCTAATGGCAATGAACATAATTTCAAAGGAAAAAAAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGCTCAGGAATGTCAGAATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126:ENST00000489671:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(55.4=83.6)
A:
NA
C2:
PF0231915=E2F_TDP=PD(42.2=71.4),PF087815=DP=PU(4.2=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains