RnoINT0150106 @ rn6
Intron Retention
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104152337-104154832:+
Coord C1 exon
chr8:104152337-104152499
Coord A exon
chr8:104152500-104154688
Coord C2 exon
chr8:104154689-104154832
Length
2189 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
AATAAAAACATTTTCAGCAGGCT
3' ss Score
2.08
Exon sequences
Seq C1 exon
TAAACGAAGCAAAAAAGGGGACAAAAATGGGAAAGGCTTGAGACATTTTTCAATGAAGGTGTGTGAGAAAGTTCAACGGAAAGGCACAACATCATACAATGAAGTAGCTGATGAACTGGTGTCTGAGTTTACCAATGCGAGTAACCATCTGGCAGCTGACTCG
Seq A exon
GTAGGTGGATTGTGGATTACACATGGACTATGGTTCCTAGATTCAGTACACCTATTGGTTTGTGACATGGATCTGAGGAACCAGGGAAGCTTAGGAATCCTCTGAGAGTTTCCTATTTATTTGTATGTATGTGATATGTGGGGGCACATGCATGCCATGACACATATGTAGAGGTCAGAGGACAGTGTTGCGGGTTCCTTTCCTTCTACCTTTACCTGAGGTCTGGAGATGGTACTTGGGTCATAAGGCACTCGTGGGAAGTGCTTTACCCAGCTGGTGCGTGTCGGTAGCCCACAAAGATAAACTTTTTCTTTTCAAGACAAGATTTCTCTGTGTCATCTGCCTATCCTGGACCTCCCTTTGTAGACCAGGCTAGCCTTAAACTCAGAGATCTGCCTACCTCTGCCTTCTGAGTGCTGGGATTAAAGGTATATATATCCCCACTGCCTGGCAATACTATTAAAATATAATATTGTGGTCATATAAATTTTGGGGCACTTAGGAGAGTGAAGCCAGCTTGCAGTATAAGGAGCACAAGGCTAACCCAGTCTACATAGTAAGACCCACCTCTCCCTCCCATGTTAAATCAACAAAAATAGAAAAGTTCAAAATCCTAGGATTTTACCCAAAAAATGATGTTAAATAAAGCCTACAATGTCAAGAATACAATATTTATATTCAATTCCATAATTTAAATTTTTTACTGATTTAGATTTATTTTATATTTCAATGGACTCAGTATTTCCCACTATCCTTTATTATCACATTCAATTGATTTGATTTTATTGTTAAGAACTTCCTGTGTACAAGAACCTCATGATACAAATCAGTGTAAATGTATTCATTCAATAAAAGTTTTATTACCAAAAGAAATGACAAGTTAGCTGAACTAATCAGTGTGCAGAGGTAGTACAGAAATATTTTGGGACATAGACTGAAAACAGCTAGTCAGCACTAGTCCATGAACCATATTCTAAGAGGCACAGTTCACAGACTTTAAAACATGCATCCTTGATGTGTATGTGCATATGTATGTTGTCTGTGTTGTATACACCTGCGAAGGCTCATGCGTGGGTGTGAAGGCCCATGTGTGGGTGTGAAGGCTCATGCGTGGGTGTGAAGATGCCGGAGACAACATTGGGTGTCTTGCTCTGTCAGTTGTCCCCTTATTTTTGTTTGTTTGTTTATTTATAGACAGGGTCTCAGTTTGCATGTCTGACTGGCCTGGAGTCACCATGTCGAACAGACTGCTCTTGCTTCTTCCTCCCAAGTGGTGGGATTAAAGATGTGGTACCATTCCTGGCATCCTCACACAAAGCCTGGGTTTCTCACTGAACTCGAAGCTTAATGATTGACTAGTTTGGGAGGCCAGGAAACATCTAGGATCCACGTCTTCACCGCCCTTGTATTGGGGTTGCAGACGCATGCTGCAGTTGGCTTTTACATGGGTGATGGGGATCCAAACAAGTATAGAATTCTTCCAAATAATTCAGGCACTTTGAATACTTTACCCCTCTATGTATACATGTGTTATAATATTAGTTTTTATATCTTGGACTTCTTAAAAACTTTATGCAGCTGAGATTTACCCTCATCTTTATGTTTTCTGCATCTCCAAGCTTCCAGTTTTAGTACTCTTCCCCCACCCAAAGATGTCCCCGTAGTGTTCTTGTCAACCTAGGGTGGTCTAGAGTTTGTTTCTGACACTCTTTTGTGTTACGGGTATCTTCAGGGCTGGAGCTGTCACCTAGTGGTAGAACATTCTTTTAGCATGCATGAGGCCTGGGGTTCAACCCTCAAAACAACCTTAAAAAAAAAAAAATGAAAAAAAATGTCTTCAGAACTGGTAAGATACCTCAGCTGACAAAAGCATTTTGCCACCAAGCCCGATGACCTGAGTTCAGTCATAAGATTCATGTGATGGAAAAAGAGATTGGGCTTCCACAAGTGGCCCTTGGAAGCTCTCCATGGACAATATGGCAAGAGTTTATGTCCACTGCCCCTCCCCAAATACACACACAAGTAAAGTGTTTTAAAAAAGTTTACCAGTGTCTTTGTTACATATTGACCTCCAAGATGTTTTCACGGGGCATAGAATTTTCCAGTAGTTGGGAGATACTACTGTTAATATCAACAGCATGTGAAGATAACCTTTAAAATTCATCCCTTAATAAAAACATTTTCAGCAG
Seq C2 exon
GCTTATGATCAGAAGAACATTAGACGAAGAGTTTATGATGCTCTGAATGTGCTAATGGCAATGAACATAATTTCAAAGGAGAAAAAAGAAATCAAGTGGATTGGGCTGCCTACCAACTCCGCCCAGGAGTGCCAGAACCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241:ENSRNOT00000015015:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
NA
C2:
PF0231915=E2F_TDP=PD(41.5=70.8),PF087815=DP=PU(18.2=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]