MmuINT1032997 @ mm10
Intron Retention
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96294965-96297770:+
Coord C1 exon
chr9:96294965-96295127
Coord A exon
chr9:96295128-96297626
Coord C2 exon
chr9:96297627-96297770
Length
2499 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
ATAAAAACATTTTTTAGCAGGCT
3' ss Score
2.54
Exon sequences
Seq C1 exon
TAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGCTTGAGACATTTTTCAATGAAGGTGTGTGAGAAAGTTCAGCGGAAAGGCACAACGTCATACAATGAGGTAGCTGATGAGCTGGTATCTGAGTTTACCAACTCAAATAACCATCTGGCAGCTGATTCG
Seq A exon
GTAAGTGGATCATGGATTATGCACAGAGTGTGAGTCCTGTGTCCAGTATATCTATTGGTTTATATCATAGATGTGAGGAATCTGGACACTTGGAAATCCTTTAAGTGAGAATTCCCTATTTATTTGTATGTTTGTGTATGTGATATTTGTGGGCACATGCATACCATGACAGAGGACAATTGTAGAGGTCAGAGGACAATGTTGTGAGATCAGCCTCCTCCTTCCACCTTCACCTGAGTTCATCAGGAGCACATGGGAAATGCTTTACCCTGCTGGTGAGTGTCAGTAGCCCACAAAGATAAACTTTTTTGTTTTTTCGAGTCAAGATTTCTCTGTTTAGTCTTGGCTATCCTGGAACTTGCTTTGTAGACTAGGCTAGCCTTAAACTCAGAGATCTGCCTGCCTCTGCCTCCTAAGTGCTGGGATTAAAGGTGTGTGCTACCACTGTCCGACTCTGGCAATATTTTAAAATATAATATTGAGGTCATGTAAATTTTGGGGCACTTAGGAGATTGAAGCCAGCTTACAGTATAATGAGCATAAGGCTAACCTGGGCTACATAGTGAGACTCCCCTCCCCTTCACACACACACTGCCATGTCAAATAAACAAAAATAGAAAAGTTCAGAATCCTAGGATTTTACCCAGAAAATAATGTTAAATGAACCCTATAATACAATAAAATACAATATTTATATTCAGTTCCATAATTTAAACTTTTTATTGATTTAGATTTCATTTTATATTTCAATGGGCTCAGTGGTCCCCACTATCCTTTATTATCACATTTAATTGATTTGTTTTGTTGTTAAGAACTTCCTATGTACAACAAGATAAGAACCTCATGATACAAATCACTGTAAATTTATTCATTCAATAAAGTCTTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTTACTGCTCTTCCAGAGGACCTGAGTTCAGCAACCAGCAACCACGTGGTGTCTCACAACCATCTGTAATGGAATCCAATGCCCTCTTGTGTGTTTGTTTGTTTATAGATAGGGTCTCAGTTTGCATATCTGACTGGCCTGGAATCACCGAGCAGACCAGACTGCCCTTGAACTCATAGAGCACCACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGACATAGTTTCATTCCTGTCAAGTGCTGGGATGAAAGACAGTACCATTCCTGACATCCTCACATGAGCCTGCGTTTCTCACTAGACTTGAAGCCTAATGATTGGCTAGCTTGGGAGGCCAGTGAACACCTAGGGTCTATATGTCTTCACCCGCCCTTGTATTGGGGCTGCAGATGCAAACTCTTACATGGGCAATAGGGATCCAGACGCAGGTTCTCGCAAGCACTTACCTACTCAGCCATCTCCCTAGCCCCTGGTGGTTTTAACGTATAAAATTCTTCCAAATAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCTGAAGGTCCGAAGTTCAAATCCCAGCAGCCACCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATAAATCTTTAAAAAAAAAATTCTTCCTAATAATGCAGGCACTTTGAATACTTTACCTCTCTATGTGTACATTTGTTATAGATATTAATTTTTATATATCTTGAATTTCTTTTTTTTTAAAGATTTATTTATTTTATTTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCCGATCCCATTACAGATGGTTGTGAGTCATCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCGGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCCCTATCTTGGACTTCTTAAAAGAACTTTTTATGCAGCTGAAACTTACCTACATCTTTATGTTTTCTACCTCTCCAAGCTTCCATTTTTAGTCCTCCTCTCCCACCCAAGAAAACCCTGTAGTTTTTTGTCAGTGTAGTGGTAGTATAATGTTTGTTTCTGAGGTTGTTTGTGTTAAAGGTGGCTTCAGTGCTGGAGCTATAACCAGTGGTAGAACACTCTTTTAGCATGCATGAGGCCCGTGGTTCAACCCTCAGAACAATCTGAAAAATAGATAGACAAATAAATGAAAAGTGTCTTCAGAGCAGCTTAGATGCCTAAGCTGACAAAGCATTTTCTAGCAAGCCTGATGGCCTGAGGTCAGTCGCAGGGTTCGTGCGATGGGAAAGACATTGGGCTTCCTTCCACAAGTGCTCCTTGGAACTCTACAGAGACAATATAGCAAGAACACACACAAGTAAAGATGTATAAAAAAAAGTTTACAAGTGTCTTAGTTACATATTACATTCTGAAGATGCTTTCACTGGGCATAGAATTTTTTCCATACTTGGGAGATACTATTATTAATATCAACAGCATGTGAAAGATAACCTTTAAAATTCACCACTTAATAAAAACATTTTTTAGCAG
Seq C2 exon
GCTTATGATCAGAAGAACATTAGACGAAGAGTTTATGATGCTTTAAATGTACTAATGGCGATGAACATAATTTCAAAGGAAAAAAAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGCTCAGGAATGCCAGAACCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411:ENSMUST00000165120:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
PF0231915=E2F_TDP=WD(100=76.8)
C2:
PF0231915=E2F_TDP=PD(41.5=70.8),PF087815=DP=PU(4.2=12.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types