MmuINT0160138 @ mm9
Intron Retention
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3438627-3439772:+
Coord C1 exon
chr17:3438627-3438773
Coord A exon
chr17:3438774-3439700
Coord C2 exon
chr17:3439701-3439772
Length
927 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTTCCTCCTCTGTATTAGATG
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTGTGTTCCAGAGATGATTCCACTCTCAGGAAAAGAACACTTTCCCTTACCCAGAGAGGAAAAAGCAAGAAAGGCATATTTTCTTCATTGAAAGGTCTGGACACCCTAGCAAGAAAGGGTAGGGAGAAGAGAGCTTCCATAACTCAG
Seq A exon
GTGAGTTCTTGACATGGGAGGAACACGATGCTAGGTGAAATTTTTGACACCTCCATTTCTATTTGCATTTTTGTTTACTTGCAAGCAGTAGCTATTTGTTGGTTATAGGTAGCGGTTAACTGTAATCCATTGGCTAATATTGAGCCTACATTTTCTGAATGAAACCACCATAATTATATTCTGTATATAAATGTGAAGGTCAATTTTTATATTAAGGTAACTTCATATAATTAAAATGATAAAGTAATAGATAACAGGATAACTTGCTTATTTTAGAAGTATCATTTAGTTAATTAAATGAGCCTTACTGTCTGCCTCAGTGTATCTGCTAAATGTTCTTAACAAAAGATTTCTTGATAAACAAAAGCATTTGGTTGAACATTTTTGTTTTAAAAAAGATATAATGTCAGTACTTACACAGCTGAATGAAGTTTATTATTAGGTATGCCTAGTTGAATAGTTCATGTTAGTATTCTACAAAATTTAGAATATAAGATTTACAAAAGTAAAAAAGAATGATTCTAATCTTTTTGGCTTCAAACAAAGGTCTATTAACATATTGTCTTCCAATATTTATTCTAAGCACATTAGAAACAGTTATAAGATCGATTTTGTGGCTTTGCCAACTTTGTTCCTCATCTTCTGAAATGCATAATTAGTTAAAAAAAAAAGGAGCAATGTCAAGAGAATTCCAGATGACTTAAATACTATGAAACATCACAGAAAAGTATATATGAAGCTATGAGAGGATAGAAAGCAGATATCTCTGCAGAGGGAAAGCTTCGTATTTGAATATTAGTGTAGACTGTGAAATGGAGACAAAACAAAATGTTATACAACTTCAATCTTTAAACTAAAAATGTGTAAATGCCAAGGAACACTGCAGAACCTTCTTATTAGTCGTCTTTTCTTCCTCCTCTGTATTAG
Seq C2 exon
ATGTTTGATTCTAGCCACAGCCATGGATTTCTTGGAACTCAGCTACCTCAAAAGTCCACTAACTCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800-Tiam2:NM_011878:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTTCCAGAGATGATTCCACT
R:
TGGAGTTAGTGGACTTTTGAGGT
Band lengths:
214-1141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: