GgaINT0085334 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52433200-52436463:+
Coord C1 exon
chr3:52433200-52433346
Coord A exon
chr3:52433347-52436400
Coord C2 exon
chr3:52436401-52436463
Length
3054 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTTATCTGTATTATTAATAGATT
3' ss Score
7.06
Exon sequences
Seq C1 exon
ATCTGCTCCAGGGATGAAGCTGCTCTCAGGAAGCGTACCCTGTCTCTGTCTCAAAGAGTCCGAAATAAGAAGGGTTTGTTTTCTTCACTAAAAGGACTGGACACACTGGCAAGAAAAGGAAAAGAGAAGCGACCTTCCATAACGCAG
Seq A exon
GTAAATCTTATTTGCTGAGGATTTAGGATACTGGAAGCAGAGAAGGGCTTGTTTCTACTGGGGCTTATCCTGCCTAATGCAGTTGGTGCATGGGGAAGGAGACATCTGTCCATCAGACTTGCCTTTACAATTTCAGTAGACATTATAGACTTGTAATGAGAGCATCACTTGTGAAGAGGCATTGGTATATATCTGATTTTGGATTCCTTTGTGTTAAATAAGGCTGATGAATGAGAGATTTTGACCCTGTGGATTAGTTTATCTGCAGTATGACACCATCTCTTTTGAATTTGGAAGAAAACTCATCTTCTGGCCATCTTCAAATTGTTTTGAAGTAGGATTTATTTGGAGAAAACTTATATGCAAGTCTTTAATCCAGTGTTGTGCTGACACGTATCCGAGACTCTGAAGTACTATTGCAATTTAATACAGAATAACATTGGTGAATCTTCACGGAAAAAAAGGAGAGACTGATCCAAAGATAGCGGCCTTTGGCATTGCCTCTCACAGGAGGTATACAAAGCAAACCTATCCATATTTGCATTGCTGTAGTCCCAGAGCTGATGAAACAGATTTAATACTGCAAAATAACACATCAGGATTTTCTGGTCTGGTTATTTGTATTTTTAATAGGTAAATATTTATCTGTGTGTTGCATTGGGATGAAGCTTCTTTGGAAGACTGTTAGGCTTTTTTGCATATCAGTTGAGATGTGTTACATGGTGACACTGAATAAGAATAAAAAATAAGAATAAAAATAAAAAAAATACACTGAATGAGAATAAAAGCTCAAATCTGTCTTTTGAAAGAGGGAACTGGCTGAGAGATTTTCTCCAGGTGGTCCTTTTCATATATTTTTCAGTGTTCTCTGTGACAGGTGAGGCTGGTCTGTGAGTTCTACATCTCTGTTCCTTTATTAATGACAGGCCTGAGGGAAGGGTTGCTGTGCCCATTAGCTTCATTTCCAGCTGGGCTGATACCTCTCACTGCCTTAACTGCACGATACATCCTCCTGTACGGTTTATAGCCTGTGAAGGGGATTCTGTGGAGCACAGGGACAGGGAATCTCATTTCCACAACAAGGCAATGAGGCTCCTGCTGCCCTCCTAGCTCTTTCCTGAACACAGAGGACAGAGTACTGGGCACAGACAGAGGTGTCCCCAACGCGTCCTCACCATCTTTGTTCCAAAACTTGCAACCAGCTGGCCCTAAAAAGTGTTCATTTTCATCCAAGAACTCAGATTCTTGTATTTATTTGATTTTTTTATTAAGCAACTTACAGTAAAATTAAGGAAATGTAAATCCTGACTGTTGCATATTTAATAACACTGCACTATGACTCATACCCATAAAAGTGAAGAATTTTTAAAAGCATGAATTAAAAACTGACCCTTGAACCTGGAAAGTGGCTGAAAAGGGAGCCATGTCATTGCTCAGATTAGTGTATATGCACATAATTGTAAATCAGAATAGGCCTGGGGCTGCCTTTCTTGTCAGCTTTTCAACCCGCTGGGAAACTGGGTTGAGCAGGAAAGTCAGGGTTGGTTCTCTCCTAATTGTGCTCCGACATCTGTTTCAAAAAATGCGTTAAAAGTTTCTTGCACTCATGGATTTAATTAAAATTCATTTGACTAGAGCTAGTATGGCTTTATCTATAGTACTCTAGCTTCAAAATTAGATAGTATGTTCTTGTACATTGTTGTATCAGAGAAGTTTTAAATTTTATCTTATTTTTATGTTGTTAATAATAATTCAAAAAATAGGGTGCAGAGTTTCTATTCCAGGAGGCTTTCGTAAACATTAGTGAAGTGACTCAGTCTTTTAGAAACCAGTTAATAAAACTGAACTGTAGCAGATGGGGGACGTCTAGGCTCACATTATCCTCAGTTTCTTAAATGCTTATCTGCTTTTCTTCAGTCTAAGTGATAAACTATTTTGAGAAATCATAAACAATAAAATGCTTTGACTACATCTGCGGGTAAGACAAGAAAGAGGAAGTTCAAAAGTAGTGCCTGTTATAAACATTGTCAGAAACTGCATTTCATGTGAAATTTTAGAAAAGAGTTTGTCATTGTCTTGGATTATCCAAAAGGTTTCTCCAAGGACAAAAGGAAAAAAAAAAAAAAAAAAAGGTCAGATGTAAGTCAGATGATATCGTACTGATTTGTTGACTCCAGAAGGAGACTAAAAGTGCAATTTATGTTTGTACTTGAGGACAGTAATGTCAGTACCTGCAAATGTCAAGATCTTATGTGAACTGTGTAGTTCTATCCTTATGTTTATACAACTCTTATCACCAAAATATCTGATTGTATCCTTAGCTGTTGATTTTTTGTTTGTGTGAATAGTCCTAACATCTTTCTGAGATACTATTAACTACTACTTCCTAGCCTCTCTGTAGAAACTACTACTTTCTACACATATGGGAAATGTAGGTTGCAGTTTCTGCTTTCATCAGTTCCAAAGTAGGGCAATAGTCAGCTGTTTTCATTCCTTGCTAGTGCTGGTGGGGGCCAGGTATGCTGTTCTAGCTAACGCTGTATTGCTGTCAATAGTGTCAGGCTTACTGTTCAGGTAGATGAGCCAAAAAACTATAGGGGATGAAATTTTCCAAAACTGCAATATTAATTTGAAATTGCTCCTTTAAATCATTATGAGATTTGTAGCTGTACCTTGTGATAGAGCAAATGGTGAAACTGTAACTTGGAGAAGAGTACGTGATTTGATGGTCATTGACTTTCAAGTTCTTGCTAAATAGCAGGTAGAAGAAAACAAGGATGTGGATGCTTTTGTACATGTTTTAATATAAGTGTACATGTATTCTGAAGGAGAAAACTGACTTAAATTTTCTCTATGGAGGGAAAAATCTTATTTCCTTAATACTACCGCCCATCAAAACAAAACAATCAAAAGTGCAAAGCAATCCCTGGTTTGGGAATTAGATATATTCATCTAGTTTTTGTTTCTTTGGTTGTTCAAAGAATTTGCCTAATAAATATAAGCAATTAATTTTTTAATTTGTTTAGCCTATTTATTTATCTGTATTATTAATAG
Seq C2 exon
ATTTTTGACTCCACTGGAGGACATGGATTTGCCGGTGTCCAGAATTCAGCCAACTCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]