RnoINT0150947 @ rn6
Intron Retention
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44357733-44358928:+
Coord C1 exon
chr1:44357733-44357879
Coord A exon
chr1:44357880-44358856
Coord C2 exon
chr1:44358857-44358928
Length
977 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTTCCTCCTTTCTGTCAGATG
3' ss Score
9.46
Exon sequences
Seq C1 exon
GTATGTTCCAGAGACGATTCTGCTCTCAGGAAAAGAACACTTTCCTTTACCCAGAGAGCAAAAAGCAAGAAAGGCCTATTTTCTTCATTGAAAGGTCTGGACACTCTAGCAAGAAAAGGGAGGGAGAAGAGAGCTTCTATAACTCAG
Seq A exon
GTGAGTTCTTGACATGGGAGGAACCAGAGAGTGTGGGTGACTTTTTTGATACCTCCATTTTTACTTGCACTTTTTTTTTTCTTTTCTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTTACTTGCATTTTTATTTACTCACAAGAAGTAGCTCTTTGTTGGTTATAGGTAGTATTAACTATAGTCCATGGCAAGGTCAGTTTTTACATTAATCACGATGACTCCATGTAATTAAAATGATAAAGCGATAGATAACAGGATAACTTGCTTATTTTTAGAAGAATCGTTAAGTTAATTAAATGAGTCTTACAGTCTGCCTCAGTGTATCTGCTAAATGTTCTCCACAAAAGATTTCTTGATAAACAAAAGCATTTGGTTGAGCATTTTTATTTAAAAAAAAATATGAAGTCAGTACTAACACAGCTGAATGAAGTTGATTTTTTAGGTATTCCTAGTTGAATGTTTAATGTTGGTATTCTCCAAAATTTAGAAGATAAGATTTACAAAAATAAAGAAGAATGATTTCTAGTCTTTCTGTCTTCAAACAAATGTCTATTAACATATTGTCTTCCAATATTTATTCTAAGCACATTAAAAACAGTTAGAAGATTGATTTTGTGGCTTTGCCAACTCTGTTTCTCATCTTCTGAAATGCATAATTAGTTTAAAGAAAAGCAATGTCAAGAAAATTCAAGATTATTTGAATACTGTGAAACATCACAGTAAAGTAAGTATGAAGCTATAGGAGGAAAGAAAGCAGATTTTTCTGCAGAGGGAAAGTGTCACATTTGATTATTAGTACAGACTGTGAAATGGAGATCTAATAAAATGTTATACAACTTCAATCTTTAAACTAAAAATGTGTGGATGCCAAGAAACACTGCAGAATCATTTCATTAGTCTTTTTTCTTCCTCCTTTCTGTCAG
Seq C2 exon
ATGTTTGATTCGAGCCACAGCCATGGATATCTTGGAACTCAACTACCTCAAAACTCCACTAACTCCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728:ENSRNOT00000065386:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCAGAGACGATTCTGCT
R:
CACTGGAGTTAGTGGAGTTTTGAGG
Band lengths:
214-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]