MmuINT0160582 @ mm9
Intron Retention
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105042844-105045608:+
Coord C1 exon
chr11:105042844-105043365
Coord A exon
chr11:105043366-105045525
Coord C2 exon
chr11:105045526-105045608
Length
2160 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCTCTTTCTTTTTCTGTAGAAA
3' ss Score
11.64
Exon sequences
Seq C1 exon
CGTGCAAATCTCGCGAGGAAACACGCGGTTTCACTAGTGTGTTTACACCGATCACTACTAATCCGGACCGAACCGATCCGGATTAAGGGGCCGGAGGCGGGTCCTGGGCACTAGCGGTTCCGACCCCCCCCCCATCCCGCCCTCCGCGCCGCACCCGAGTGGCCCCCAGCCGAGCGGGCCCCCACTTCTCGGCCCGACCCAGACCCTTCTGCGCCTCCCTTGGCCTTTGTCCGGCGCCAGGAGGCCGGCCCCGCGCCCCCCGGCGGCCGCCCGGGCCCGGGCCCGCGTCAGCCGCCTGGCTCCGTACGCGAGCTCGGGGATCTGCGGCCTCCGTGGCCCCCCTCCCCCGCCCGCCCTGTCGTGGAGCCCGGCGCCGCCGGCGGCTGCCCGGGCGGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAGGGGGAGAGCGGAGCGGTCAGCAGCCGGGTCGGGTCGGGGCCCCTCCCGAGAGGAGAGTGGAGCGGCAGCGGCGGCAG
Seq A exon
GTGAGAAGCTCAGCCCCTGGACGTGGAAGGGCGCCGGGGCCTGGGGTATTAACCGTCCCGGGGGCCCCACTCCAGGGCCCGAGGAGGCTGCGACCCGGGCCGGCGTCGTGCCGCAGCTCCTGGGCGCCGAGGCGGGAGGTGCTCCCCGAGGGCTGCGGGGTCGCCGAGGGGCCGGGCCGAAGATGGACCAGGCCCAGGCCTGGGAGTGTGGCGGTCGGCCTGCCGGGAGAGGCGACTCCGGGGAGCTGGAGGCCTCGGCAGCCTACGGGGCGCCCCCGAGAGCTGTCCCTCGCTCCGTCCGTGACAGGTGGGCCCGGAGTTGGGGAAAGTTTGGAGCCGGCGAGGGGCGCCGGGACCAGGCCCCATCGGTCCTGCTTCCCGGCTTGGGGCCATTGGGAGGATCCCGGTCCAAAGCCCCTCTGGAAAGAGATGGGGTGGGTATTTTCTGATCATGAGTTGACATTAAATGGGGTAACTGCTAGGGCCTCATTTTCTGGGCCAGGCCTGGGGATGGAGGGTTGGGAAATGTTTCCAGAGACCTTGGGATTGGGGAGAGACTGCATTGTAACCTCTGCCTTTCCGACCTCGATTATTAGGGCAGGACAAGTAGTGAGCAAGGCCACCTACCTACTTAGGGAAAACTCGGTTTTCTTCTCAGTCTTTTTTTTTTTTTTTTAAGATGCCTTTCTACCATTCTAACAGTTTCCTAATTCCTTACTTGTGTGTGTGAGTGAAACTTGAATTCGTCACCTTTTCATTCCCCTTTGCTCCAGGCATTCAGTCCAGGAAGGGAAATGAAAGTTAGGACGGGTGTAGGGGATGTTACTGGAAATTATGGAGCTGTTAGATTGCAGAGAAGGTTTGATTCCTTTTTCAGTGAACTTTAATACAAATTTCTGCCAATCACTCCAGGAGTGCCTCCAGTAACTCTGGAATACTAGAATGTTTGAAGGGTTCCTATGTTATGATGCATGCTCTTTTTCTATTCTCAATATTGAAGAACTTTTTAATGGATGATGCAAGAGTACTTTCTCCCATCGGATGGACAAACTTGCTCATAGCATCTACATTAATTGGTCAGGAAAAGAGTTTAAAAATGGTGCCCTCCTGCTCCTCCCTGTTTGGGAGGAGTGCAAGCAGGTACCCAGAGTGGAGAGGAAACTACTGTTCCATGGAGTGGTCAGAAAAAGATTTTGTAAAGGAATTGTTACAGTTACATCAATTTCCTGAGTGAATGTAGGTTGATGGTTTATGTTGGGTTCTACATTACATTTACCATGAAAGAATTCCATTTTTCACTAGCTACTGTGAGCTATTCAGAGAAAGGAGCTATATACAGTAGGGCTTCTTGACGTTATTTGCAGCTTCTGATTCACTCTGGATTCACTTGAAATTATTAAATGACTCATATTTTTAGCTTAACTAGTTCTTATGTGTTTGGGAAAGAAATCTCTAGAAGTACTTAGATTGAAAGGTATCTGACAGGAGTTTTCTATTTGTAAGTTTGCCCTTGTTCTACCCTTCTGCTTAACTTTTACAGAGTTTATATGAAGAGTTTCTTTCTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTGTCAGATCTTGTTACAGATGGTTGTGAACCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTTTATTTCTTTTTATTTACTTTTTTTTGTAATTTTTTTTTTTAAATTTATGTAGCCCTAGGTGGTCTTGAGTTTGCTGTGTGTAGACCAGGCTGCCCTTAAATTTGTGTCTGTCTGCTACTTATACCTCTTGAATGTTAGGATTATTACGGGGGGTAGACTTCCATACCTCCCTCCCCCTATAAAGACCAAATTAGAATTCAGGAAAAGTAGAAACGATCCTCGTAGGTGAGAACTTGAACTGCTACGGAATCTTAGATAACTGTTGATGACATCAGATAACTTATAGCACTTGAATGTGTATTTCCTTGAGGTTTACAAAATTACTGTGTGTTTTGTTTTACACAAAACTTTTTTCTTTTCAGTTAGTTTTCATGGCTTCTTGTCCCTCTTTCTTTTTCTGTAG
Seq C2 exon
AAATGATGGAAGAACTGCATAGCCTGGACCCACGAAGGCAGGAATTACTAGAGGCCAGGTTCACTGGAGTTGGTGTAAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694-Tlk2:NM_001112705:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.996
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: