HsaINT0167560 @ hg19
Intron Retention
Gene
ENSG00000146872 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:11842]
Coordinates
chr17:60556386-60558567:+
Coord C1 exon
chr17:60556386-60556651
Coord A exon
chr17:60556652-60558481
Coord C2 exon
chr17:60558482-60558567
Length
1830 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTACTTTTTCTTTTTCAGCAG
3' ss Score
9.99
Exon sequences
Seq C1 exon
GCGGCCGCCCGGGCCCGGGCCCGCGTCGGGCGCCTGGCTCTGTACGCGAGCCCGGGGATCTGCGGCCTTCGTGCCCCCCCTCCCCCGCCCGCCCTCTCGTGGAGCCCGGCGCCGGCGGCGGCTGCCCGGGCGGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAGGGGGAGAGCGGAGCGGTCCGCAGCCGGGTCGGGTCGGGGCCCCTCCCGGGAGGAGCGTGGAGCGGCGGCGGCGGCGGCGGCAG
Seq A exon
GTGAGAGGCTGAGCCCCGGGCGGGGGAGGACTCCAGGCCTGGGGCATTAACCGTCCTGGGGACCCCTTTGGCCTGAGGAGCCTGCGACCTGGGCCCAGCTCGGGGCCGGCTCCGGACCGCAGCTCCTGGGCGCTGAGGCGGGAGGGGCTCCCTGAGGGCTGCGGGTCGCTGAGGGGCCGGGCAGAAGATGGGGGAGGCCCAGGCGGCCCCGGCCTGGGATTGGGGCCGGCGGCCGGAGGAGAGACGGGGGCCCCCAGGCAGCTGGAGGCCTCGGCAGCCTCCCGGGCGCCCCCGAGAGCCGGCCCTCCCTTCCTCCGTGACAGGTGGGCCTGGAGTTGGGGAAAGTTTGGAGCCGGCGAGGGGCGCCGGGACCAGGCCCCATCGCTCCTGCTTCCCGGCTGTGGGCTGCAGGGAGGATCCCAGTCCAAGGCCCCGCTGGAATTAGACGGAGTGGCTATTTCCTTAACATGAGTTGACATTAAACGGAATAACCGCCGGGGCGTCATTTTCCGGGCCGGGCCTGGGGATGGAGGTTTGGGAAGTGTTGCGAGAGACCTTGGGGTTTGGGAGAGACTGCAACCTTTGCCATTCCGACCTCGATTAGGGCAGGGCAAGACGCGAGGAAGGCCACGGGGGAAACTCATTCTCCCAGTCTCTTTTTTTTCCTTCTTTTTCTTTTTGTAAAGATGCATTTCAACCTTTCTGAGAATTTCCTAATTCTCTCTCTAACCTGCACTTGCATGTGTGGGTGAAACTTTAATTTGTCACCTTTTCATTCCCCTTTGCCCCAGGCTCTCAATCCAGGAAGGGAAATGAAACTGAAGGACTTGTAAGGGGGTTGTTACTGGAGATTGTAGAGTTGTTGGATTGCAGAGGAGAATGTTCGATTCATCTTTTCAGTAACTTTAAAATCACACCAACCATTCCAACTACTTAATAATGTGTTCGAAGGGGTTCTATGTAATATGTTTCTTTTCCACTGTTAATATTAAAGAGAGGTTTTAAATGGGTCGTGTAGGAGTTGGTCTCTTGCAAAGGATGAACATATTTGCTGAAAGTAGCCTGTGCATTAATTGGTTATGGAAGTTTAAAAATGGTGTCCTCCTGCCCCTCCCTGCTTGGAAGAAGGGCTAAAAGCAGATGTCCAGAATCAAGAGAAAACTACTGCAGGGAGTGGTCAGAAAAAGATTTTTTAAAGGGATTGTTATGGAGCTATATTAATTTACTGAGTGAATGGAGGTGGATGGTTTTACCGTGGGCTCTCTATTAAATTTAAAATAATTCCTTTTCTCATGAGCTACTGTGAGCTCTTCAGAGACAGGAGCTGTATAATAGTGATTTTGCAGTTATTTGTAGCTTCTGATTCATCCTATATTCTTTTGAAATTATTGTCAATGATTCATATTTTTAGTTTAAGGACTACTTCCTGAGTGGGAAATAAATATCTGAAGATACTTAGCTAGATTAAGGCTGATAGAAGGAATTTTCTTTTTGCAGGCTAGTTCTTGTTTTGTTCTTTCCCCTGTGCTCAACTTTTACAGAAATTATATGAAGGGTTTGAGGGGTTTATTTTTGCTGTTAAAATCAAATCAGAACTAGGGAAGAAAAAGTGGCTGTCATAGAAGAGGACTTCTGAGCTGCTTTAAAACTTTTCAATATATTACTGTTTGATGCAGCACATAGTAGTCTACCACTTGTATGCTATATTTACTTGAGATTTACCTGCATTTGATCTTTCAGTGAAATAATTACTGTGAGTTTTGTTCTACAGAAAATTGCCTCCTCACATTTTAGTGTTTATGGTTTCACAGCCTACTTTTTCTTTTTCAG
Seq C2 exon
CAGAAATGATGGAAGAATTGCATAGCCTGGACCCACGACGGCAGGAATTATTGGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146872-TLK2:NM_006852:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGCTCTGTACGCGA
R:
ACTAACACCTACTCCAGTAAACCTG
Band lengths:
318-2148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)