HsaINT0167560 @ hg38
Intron Retention
Gene
ENSG00000146872 | TLK2
Description
tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr17:62479025-62481206:+
Coord C1 exon
chr17:62479025-62479290
Coord A exon
chr17:62479291-62481120
Coord C2 exon
chr17:62481121-62481206
Length
1830 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTACTTTTTCTTTTTCAGCAG
3' ss Score
9.99
Exon sequences
Seq C1 exon
GCGGCCGCCCGGGCCCGGGCCCGCGTCGGGCGCCTGGCTCTGTACGCGAGCCCGGGGATCTGCGGCCTTCGTGCCCCCCCTCCCCCGCCCGCCCTCTCGTGGAGCCCGGCGCCGGCGGCGGCTGCCCGGGCGGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAGGGGGAGAGCGGAGCGGTCCGCAGCCGGGTCGGGTCGGGGCCCCTCCCGGGAGGAGCGTGGAGCGGCGGCGGCGGCGGCGGCAG
Seq A exon
GTGAGAGGCTGAGCCCCGGGCGGGGGAGGACTCCAGGCCTGGGGCATTAACCGTCCTGGGGACCCCTTTGGCCTGAGGAGCCTGCGACCTGGGCCCAGCTCGGGGCCGGCTCCGGACCGCAGCTCCTGGGCGCTGAGGCGGGAGGGGCTCCCTGAGGGCTGCGGGTCGCTGAGGGGCCGGGCAGAAGATGGGGGAGGCCCAGGCGGCCCCGGCCTGGGATTGGGGCCGGCGGCCGGAGGAGAGACGGGGGCCCCCAGGCAGCTGGAGGCCTCGGCAGCCTCCCGGGCGCCCCCGAGAGCCGGCCCTCCCTTCCTCCGTGACAGGTGGGCCTGGAGTTGGGGAAAGTTTGGAGCCGGCGAGGGGCGCCGGGACCAGGCCCCATCGCTCCTGCTTCCCGGCTGTGGGCTGCAGGGAGGATCCCAGTCCAAGGCCCCGCTGGAATTAGACGGAGTGGCTATTTCCTTAACATGAGTTGACATTAAACGGAATAACCGCCGGGGCGTCATTTTCCGGGCCGGGCCTGGGGATGGAGGTTTGGGAAGTGTTGCGAGAGACCTTGGGGTTTGGGAGAGACTGCAACCTTTGCCATTCCGACCTCGATTAGGGCAGGGCAAGACGCGAGGAAGGCCACGGGGGAAACTCATTCTCCCAGTCTCTTTTTTTTCCTTCTTTTTCTTTTTGTAAAGATGCATTTCAACCTTTCTGAGAATTTCCTAATTCTCTCTCTAACCTGCACTTGCATGTGTGGGTGAAACTTTAATTTGTCACCTTTTCATTCCCCTTTGCCCCAGGCTCTCAATCCAGGAAGGGAAATGAAACTGAAGGACTTGTAAGGGGGTTGTTACTGGAGATTGTAGAGTTGTTGGATTGCAGAGGAGAATGTTCGATTCATCTTTTCAGTAACTTTAAAATCACACCAACCATTCCAACTACTTAATAATGTGTTCGAAGGGGTTCTATGTAATATGTTTCTTTTCCACTGTTAATATTAAAGAGAGGTTTTAAATGGGTCGTGTAGGAGTTGGTCTCTTGCAAAGGATGAACATATTTGCTGAAAGTAGCCTGTGCATTAATTGGTTATGGAAGTTTAAAAATGGTGTCCTCCTGCCCCTCCCTGCTTGGAAGAAGGGCTAAAAGCAGATGTCCAGAATCAAGAGAAAACTACTGCAGGGAGTGGTCAGAAAAAGATTTTTTAAAGGGATTGTTATGGAGCTATATTAATTTACTGAGTGAATGGAGGTGGATGGTTTTACCGTGGGCTCTCTATTAAATTTAAAATAATTCCTTTTCTCATGAGCTACTGTGAGCTCTTCAGAGACAGGAGCTGTATAATAGTGATTTTGCAGTTATTTGTAGCTTCTGATTCATCCTATATTCTTTTGAAATTATTGTCAATGATTCATATTTTTAGTTTAAGGACTACTTCCTGAGTGGGAAATAAATATCTGAAGATACTTAGCTAGATTAAGGCTGATAGAAGGAATTTTCTTTTTGCAGGCTAGTTCTTGTTTTGTTCTTTCCCCTGTGCTCAACTTTTACAGAAATTATATGAAGGGTTTGAGGGGTTTATTTTTGCTGTTAAAATCAAATCAGAACTAGGGAAGAAAAAGTGGCTGTCATAGAAGAGGACTTCTGAGCTGCTTTAAAACTTTTCAATATATTACTGTTTGATGCAGCACATAGTAGTCTACCACTTGTATGCTATATTTACTTGAGATTTACCTGCATTTGATCTTTCAGTGAAATAATTACTGTGAGTTTTGTTCTACAGAAAATTGCCTCCTCACATTTTAGTGTTTATGGTTTCACAGCCTACTTTTTCTTTTTCAG
Seq C2 exon
CAGAAATGATGGAAGAATTGCATAGCCTGGACCCACGACGGCAGGAATTATTGGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146872:ENST00000346027:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.825
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGCTCTGTACGCGA
R:
ACTAACACCTACTCCAGTAAACCTG
Band lengths:
318-2148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains