MmuINT1033145 @ mm10
Intron Retention
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105180488-105184294:+
Coord C1 exon
chr11:105180488-105180586
Coord A exon
chr11:105180587-105184211
Coord C2 exon
chr11:105184212-105184294
Length
3625 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAAG
5' ss Score
3.29
3' ss Seq
CCCTCTTTCTTTTTCTGTAGAAA
3' ss Score
11.64
Exon sequences
Seq C1 exon
TCCTTCAGACACGTTCAGACATCTGGTCAAGGAAGCATCAGAAGAAAACAAAAAGCTGAGTCGTTACTTTGAAGTCCGTGTCTTGGCTCGTGAAACTAG
Seq A exon
GTGAAGAAAGTGACTTTTTCCCCCTTTGGCGCTGGGGTCAGAGGTGGAACCCTTTCCCATGCAGGAAAGCCCTCCTGTCGCAGGCGCTCACCCTCTCAGCAGACACTCTGAAGAGCAGGCCCCCAGCACCCCAGGAGGGCCATCTTGTCACCGGAGGTTAAGATGGAACCTCCCCCTAGGTGCTTTGAGAGAGTTCCCCGGGGGGCGGGTAGCGACCTCCGCTCTGGAGGGGGGCATGCTGGTGAGGGCTCGGCTGTGATCCCAGGACACCTTTGTCCCTGGAGACGCCAGGCCAGTCAGGTACGTGGAAGGCGAGAGCCGCCGGCCGGCTTTCCGTGCCTGTGGCGTGGCGTGGCGTGGCGTGGGGTCTGGGGACGTGGACCATGGCTGCGGGGGATGGCCGGCTGGCGGACATCGGGTGGGCACCGCGAACTCAGTGACACCCCTTGCCCCGCTCCCGGGCTCTCTCCTCGGATCCATCGCTGGGCAGAGCAACCTCTTTCCTCACCCCAAAAAATGTGTGTAGATGAGAGGCAGGGCGAGCGCGGCAGTCCCGCCGGGTCGCCGCTCCGACGCTGCTCCGCGGCCTGAGGCGCAGCCCAACCGTCGGCCTCCGACTCTGTCTCCACAAAGGCGGGCTCCCGAGGCTCCGGCCCCGGCCGCTTACCCGGCGCCCCCGAGCCGACCAACCACCCCTCACGTCGCAGGCGGGGCCGCAAGCGCCGCCAGCCGCCCGCCCTCAGCAGCCCTGTCAGGCGCGGCCTGTTCCGCCGGTGCGGGGTCCCCTGGTTAACCCCTGCCCGCCAGCGCGGCCGCTGATTGGAGGAGGCGGAGCTCCGGGGGCAGCAGCGACCCTCCCCCCAACACCTTTCCCGTCCCCTCCCCCACGGCCGGCACTACCTCCCCCCCACCCCAGGAACACCCCCCCCCCGTGCCTCCCAGCCGTGCAAATCTCGCGAGGAAACACGCGGTTTCACTAGTGTGTTTACACCGATCACTACTAATCCGGACCGAACCGATCCGGATTAAGGGGCCGGAGGCGGGTCCTGGGCACTAGCGGTTCCGACCCCCCCCCCATCCCGCCCTCCGCGCCGCACCCGAGTGGCCCCCAGCCGAGCGGGCCCCCACTTCTCGGCCCGACCCAGACCCTTCTGCGCCTCCCTTGGCCTTTGTCCGGCGCCAGGAGGCCGGCCCCGCGCCCCCCGGCGGCCGCCCGGGCCCGGGCCCGCGTCAGCCGCCTGGCTCCGTACGCGAGCTCGGGGATCTGCGGCCTCCGTGGCCCCCCTCCCCCGCCCGCCCTGTCGTGGAGCCCGGCGCCGCCGGCGGCTGCCCGGGCGGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAGGGGGAGAGCGGAGCGGTCAGCAGCCGGGTCGGGTCGGGGCCCCTCCCGAGAGGAGAGTGGAGCGGCAGCGGCGGCAGGTGAGAAGCTCAGCCCCTGGACGTGGAAGGGCGCCGGGGCCTGGGGTATTAACCGTCCCGGGGGCCCCACTCCAGGGCCCGAGGAGGCTGCGACCCGGGCCGGCGTCGTGCCGCAGCTCCTGGGCGCCGAGGCGGGAGGTGCTCCCCGAGGGCTGCGGGGTCGCCGAGGGGCCGGGCCGAAGATGGACCAGGCCCAGGCCTGGGAGTGTGGCGGTCGGCCTGCCGGGAGAGGCGACTCCGGGGAGCTGGAGGCCTCGGCAGCCTACGGGGCGCCCCCGAGAGCTGTCCCTCGCTCCGTCCGTGACAGGTGGGCCCGGAGTTGGGGAAAGTTTGGAGCCGGCGAGGGGCGCCGGGACCAGGCCCCATCGGTCCTGCTTCCCGGCTTGGGGCCATTGGGAGGATCCCGGTCCAAAGCCCCTCTGGAAAGAGATGGGGTGGGTATTTTCTGATCATGAGTTGACATTAAATGGGGTAACTGCTAGGGCCTCATTTTCTGGGCCAGGCCTGGGGATGGAGGGTTGGGAAATGTTTCCAGAGACCTTGGGATTGGGGAGAGACTGCATTGTAACCTCTGCCTTTCCGACCTCGATTATTAGGGCAGGACAAGTAGTGAGCAAGGCCACCTACCTACTTAGGGAAAACTCGGTTTTCTTCTCAGTCTTTTTTTTTTTTTTTTAAGATGCCTTTCTACCATTCTAACAGTTTCCTAATTCCTTACTTGTGTGTGTGAGTGAAACTTGAATTCGTCACCTTTTCATTCCCCTTTGCTCCAGGCATTCAGTCCAGGAAGGGAAATGAAAGTTAGGACGGGTGTAGGGGATGTTACTGGAAATTATGGAGCTGTTAGATTGCAGAGAAGGTTTGATTCCTTTTTCAGTGAACTTTAATACAAATTTCTGCCAATCACTCCAGGAGTGCCTCCAGTAACTCTGGAATACTAGAATGTTTGAAGGGTTCCTATGTTATGATGCATGCTCTTTTTCTATTCTCAATATTGAAGAACTTTTTAATGGATGATGCAAGAGTACTTTCTCCCATCGGATGGACAAACTTGCTCATAGCATCTACATTAATTGGTCAGGAAAAGAGTTTAAAAATGGTGCCCTCCTGCTCCTCCCTGTTTGGGAGGAGTGCAAGCAGGTACCCAGAGTGGAGAGGAAACTACTGTTCCATGGAGTGGTCAGAAAAAGATTTTGTAAAGGAATTGTTACAGTTACATCAATTTCCTGAGTGAATGTAGGTTGATGGTTTATGTTGGGTTCTACATTACATTTACCATGAAAGAATTCCATTTTTCACTAGCTACTGTGAGCTATTCAGAGAAAGGAGCTATATACAGTAGGGCTTCTTGACGTTATTTGCAGCTTCTGATTCACTCTGGATTCACTTGAAATTATTAAATGACTCATATTTTTAGCTTAACTAGTTCTTATGTGTTTGGGAAAGAAATCTCTAGAAGTACTTAGATTGAAAGGTATCTGACAGGAGTTTTCTATTTGTAAGTTTGCCCTTGTTCTACCCTTCTGCTTAACTTTTACAGAGTTTATATGAAGAGTTTCTTTCTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTGTCAGATCTTGTTACAGATGGTTGTGAACCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTTTATTTCTTTTTATTTACTTTTTTTTGTAATTTTTTTTTTTAAATTTATGTAGCCCTAGGTGGTCTTGAGTTTGCTGTGTGTAGACCAGGCTGCCCTTAAATTTGTGTCTGTCTGCTACTTATACCTCTTGAATGTTAGGATTATTACGGGGGGTAGACTTCCATACCTCCCTCCCCCTATAAAGACCAAATTAGAATTCAGGAAAAGTAGAAACGATCCTCGTAGGTGAGAACTTGAACTGCTACGGAATCTTAGATAACTGTTGATGACATCAGATAACTTATAGCACTTGAATGTGTATTTCCTTGAGGTTTACAAAATTACTGTGTGTTTTGTTTTACACAAAACTTTTTTCTTTTCAGTTAGTTTTCATGGCTTCTTGTCCCTCTTTCTTTTTCTGTAG
Seq C2 exon
AAATGATGGAAGAACTGCATAGCCTGGACCCACGAAGGCAGGAATTACTAGAGGCCAGGTTCACTGGAGTTGGTGTAAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694:ENSMUST00000106939:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.915
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types