RnoINT0151395 @ rn6
Intron Retention
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93415399-93417897:+
Coord C1 exon
chr10:93415399-93415920
Coord A exon
chr10:93415921-93417814
Coord C2 exon
chr10:93417815-93417897
Length
1894 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCTCTCTCTTGTTCTGTAGAAA
3' ss Score
10.7
Exon sequences
Seq C1 exon
CGTGCAAATCTCGCGAGGAAACACGAGGTTTCACTAGTGTGTTTACACCGATCACTACTAATCCGGACCGAACCGATCCGGATTAAGGGGCCGGAGGCGGGTCCTGGGCACTAGCGGTTCCGACCCCCCCCACCCCGCCCTCTGCGCCGCACCCGAGTGGCCCCCCCAACCGAGCCGGCCCCCACTTCTCGGCCCGACCCGGACCCTTCTGCGCCTCCCTTGGCCTTTGTCCGGCGCCAGGAGGCCGGCCCCGCGCCCCCCGGCGGCCGCCCGGGCCCGGGCCCGCGTCAGGCGCCTGGCTCTGTACGCGAGCTCGGGGATCTGCGGCCTCCGTGGCCCCCCTCCCCCGCCCGCCCTCTCGTGGAGCCCGGCGCCGGCGGCGGCTGCCCGGGCGGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAGGGGGAGAGCAGAACGATCGGCAACCGGGTCGGGTCGGGGCCCCTCCCGAGAGGAGCGTGGAGCGGCAGCGGCGGCAG
Seq A exon
GTGAGACGCTCAGCCCGGGACGTGGAAGGGCGCTGGGCCTGGGGTATTAACCGTCCCGGGGGCTCCCAGGGCCTGAGGAGGCTGCGACCCCGGCCGGCGTCGTGCCGCAGCTCCTGGGTGCTGAGGCGGGAGGTGCTCCCTGAGGGCTGCGGGTCGCTGAGGGGCCAAGCCGAAGATGGACCAGGCCCAGGCCTGGGAGTGCGGCGGTCGGCCCGCTGAGAGAGGGGACTCCGGGGAGCTGGAGGCCTTGGAAGCCTACCGGGCGCCCTCGAGAGTGTCCCTCGCTCCGTCCGTGACAGGTGGGCCTGGAGTTAGGGAAAGTTTGGAGCCGGCAAGGGGCGTCGGGACCAGGCCCCATCGGTCCTGCTTCCCGGTTTGGGGGCCACTGGGAGGATCCCGGTCCAAAGCCTCGCTGGAAAGAGATGGAGTGGGTATTTTCTTATCGTGAGATGACATTAAGTGGGATAACTGCTAGGGCCTCTTTTTCCGGGCCAGACCTGGGGATGGAGGGTTGGGAAATGTTTCCAGAGACCTTGGGGTTGGAGAGAGACTGCATTGTAACCTCTGCCATTCCGACCTCGATTAGGGCAGGGCGAGTGGCGAGCAAGGCACTTATGTACCTATGGAAAAACTCGGTTTTCTTCTCGGTCTTTTTGTTTTGTTTTTTCCTTTTTAAGATACCTTTCTACCCTTCTAACAATTTCCTAATTCCCTACTTGTACGGGTGAGTGAAACTTTAATCCGTCACCCTTTCATTCCCCTTTGCCCCAGGCCTTCAGTCCAGGAAGGGAAATGAAAGTTAGGACTTGGATAGGGGATGTTACTGGAAATTATGGAGTTGTTAGATTGCAGAGAAGGTTTGATTCGTGTTTTCAATGAACTTTAATAAAAATGTATGCCAGTCCCTCCAGTAACTCTGAAATAATAGTATGTTGGAAGGATCTCTATGCAGTGCCGCTCTTTCAATGTTGAACTTTTTGATGGATGGTACAAGAATTCTATCCTCCAACGGATGGACAAACTTGCTCATAGTGTCTACATTAATTGGTCAGGGAAAGAGTTTAAAAATGGTGTCCTCCTGCCCCTCCCTGTTGGGAGGAGTGCTAAAAGCAGATACCCAGAGTGGGGAGAAACCTACTGCTCCAAGGAGTGGTCAGAAAGATTTTGCAAAGGAATTGTTATATCAATTTCCTGAGTGAGTGTAGGCTGATGGTTTATCTTGGGCTCTACGTTATATTTAACGTGAAAGAATTCCATTTTTCATTAGCTACAGGGAGCTATTCAGAGAAAGGAGCTATATACAGTAGGGTTTCTTGAAGTTATTTGCAGCTTCTGATTCATTCTGTATTCACTTGAAATTATTAAATGAATCATATTTTTAGCTTAACTAGTTATGTGTTTGGGAGAGAAATCTCTATAAGTACTTAGATCGAAAGGTATCTGATAGAGTTTTTTATTTGTAAGTCTGCCCTTGTTTTACTCCTCCTGCTTAACTTTTACAGTTTATGTGAAGAGTTTATTTCTATTTACTTTTTTTGTAATTTTTTTTTTTTTAAACAAGACAGGGTCTCATTGTATAGCCTTGAGTTTGGTGTGTGTGAACCAGGCTGCTTAAACCTCCTGAATGTTAGGATTAGTACAGGGGCGGGCTTCCATACCTTCTTCCCTCCGTAAAGATCAAATTAGAATTCAGGAAAAGTAGAAAAGACCTTCATAGATGAGAACTTGAACTGCTGTATAATCTTAGATGACTATTGATAACATCAAATAACTTAGAATATAACACTTGAATCTATATTTCCTTGAAGTTTATAAAATTACTGTGTGTTATACACAGACCTTGTTTCTTCCATGTAGTTTTCATGGCTTCTTGTCCCTCTCTCTTGTTCTGTAG
Seq C2 exon
AAATGATGGAAGAACTGCACAGCCTGGACCCACGGAGGCAGGAGTTACTGGAGGCCAGGTTCACTGGGGTTGGCGTAAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285:ENSRNOT00000066484:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.926
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTTGGCCTTTGTCCG
R:
AGTAACTCCTGCCTCCGTGG
Band lengths:
357-2251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]