BtaINT0148520 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47556655-47558701:+
Coord C1 exon
chr19:47556655-47556795
Coord A exon
chr19:47556796-47558618
Coord C2 exon
chr19:47558619-47558701
Length
1823 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TACTTTTTGTTTTTCAGTAGAAA
3' ss Score
5.46
Exon sequences
Seq C1 exon
GGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAAGGGGAGAGCAGAGCGGTCCGCAGCCGGGTCGGGTCGGGGCCCCTCCCGGGAGGAGCGTGGAGCGGCGGCGGCGGCGACAGCGGCGGCAG
Seq A exon
GTGAGAGGCTGAGCCCCGGGCGGGGGAGGGCGCCGGGCCTGAGGTATTAACCGTCCGGGCGACCCCCTCGGCTGAGGAGGCTGCGGCCCGGGCCCACCCGAGGGCCGGCGCCGGGCCGCAGCTCCCCGGCGCTGAGGCGGGAGGGGCTTCCCGAGGGCTGCGGGTCGCCGAGGGGCCGGGTCGAAGATGGGAGAGGCCCAGGCGGCCCCGGCCTGGGAGTGGGTCTTGCGGCCGGCGGGGAGAGGGGGGCACCCGGGCAGCTGGAGGCCCCGGCAGCCTCCCTGGCGCCCCCGAGAGCTGGCCCGCCCTCCCTCCGTGACAGGTGGGCCTGGAGTTGGGGAAAGTTTGGAGCCGGCGGGAGACGAGGGGCGCCGGGACCAGGCCCCATCGGTCCTGCTTTCCGGCTGTGGGCTACAGGGAGGATCCCAGTCCGAGGCCCCGCTGGAATGAGACTGAGTGGATCTTTCCTTAACATGAGTTGACATTAAATGGAATAACCGCTGGGGCGTCATTTTCCGGGCCAGGCCTGGGGATGGAGGTTTAGGAAACGTGCCGAGAGACCCTGGGGCTTGAAGGGAGGCTGCAACCTCTGCCATTCCGGCCTCGATTAGGGCAGGGCGAGACTCGAGGAAGGCCACTTAGGGAAACATTCTCTCAATCTCTGTTTTTTCTTTTTCTCCAATCTGTTCTAAGATACCTTTCTACCCTTATGAGAATTTCCTAATTCCCTCTCTAACCTGCACTTGTCTGTGTGGGTGAAACTTTAATTTGCCACCCTTTCATTCCTCTTTGCCCCAGGCTCTCAATCCAGGAAGGGAAATGAAACTGGAGGCTTTGTAGGGGTTGTTACTGAAAATTGTGGAGTTGTTAGATTGCAGAGGGGCATGTTTAATTCATATTTTCAGTGAACTTTTAAATCATGCCAATCATTCCAGTAGCTATTTAGTAATATGTTCAAAGGGGTTGTAGGTAATGGTATATGTACCTTTTCTACTTTTAATATTTGGGCGGTTTCCAGTGCGTTCTGCAAGAGTTGATTTCTTGCAAACGATGGAGGTATTTGCTGAGAGTAGCCTGTGCATTAATTGGTCGTGGAAGGAGTTTAAAAATGGTGTCCTCTTGCCCCTCCCTGCTTGGAAGGAGTGCTAAAAGCAGATGTCTAGAGCAACCTACTGCTCCAGGGAGTGGCAGAGAAAGATTTTGTAAAGGGGTGGTTATGGAGCCATACTAATTTCCTGAGTGGATGCAGGTTGATGGTTTTACCATGGGTTCTCTATTAAAATGAAGTAATTAATTCCTTTTTTCATGCTCCTCAGAGAAAGGAGGCATAATATAATAGCGTTATTTTAAGTTATTAGTAGCTTCTGATTCATGCTGTATTATTTTGAAGTTATTATTAATGATTCATATTTTTAGTTTAAGAACCAGTTCCTGTGTGTTTGGGAAGGAAGTATCCTTAAGTACTTACCTAAATTCAAAGGTTGATAGAAGAAATTTTCTTTTTTTGTAAGCTAGGCTTTGCTCAGCTTCTACAGAGATTATATGAAAGATTTGAGGGGGTTTTTTGCTGTTAAAGTCAAATTAGAACTAGTTAAGAATAAGTGACCCTCAGAAGAAGACTTTTGAGCCACTTTGTAACTTTAAATGTATTACTGTTTGATATAGTGCCTTGTGGTTTATTACTTGTATGCCCTATTTATTTGAGGTTTACCTGTATGTGAATATTCTGCGAAATAGTTACTATGCATTTTGTTGTATCCAAGAATTGGTTCTTCATGTTTTAGCTTTTAGGGTCTCACAACCTACTTTTTGTTTTTCAGTAG
Seq C2 exon
AAATGATGGAAGAATTGCATAGCCTGGACCCCCGACGGCAGGAATTATTAGAGGCCAGGTTTACTGGAGTTGGTGTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713:ENSBTAT00000020882:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGGCGCTCAGGAGAG
R:
ACTAACACCAACTCCAGTAAACCTG
Band lengths:
215-2038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development