MmuINT0160587 @ mm10
Intron Retention
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105254966-105256951:+
Coord C1 exon
chr11:105254966-105255063
Coord A exon
chr11:105255064-105256869
Coord C2 exon
chr11:105256870-105256951
Length
1806 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
3' ss Seq
TATGAATTGTGTTTCCACAGGTT
3' ss Score
10.22
Exon sequences
Seq C1 exon
GAGGAAGCAGAAATCCAGGCAGAGCTGGAAAGGCTGGAAAGGGTTAGGAATCTACACATCAGGGAATTAAAAAGGATACATAATGAAGACAATTCGCA
Seq A exon
GTAAGCAACCTGGGGCATAGTGAGCTGGAAATTGCTGACTATTTTATGTCGTGTATGATCTAGAGTGATGTTTTTACTTTTTTTTTTCCTCCAAATGAGTGTATTTAGTTCCTTTTTAGGTTATAGTAGAATTTTATGAACAAAATTTCAATCTTTATATTAAAAGTAAGGTTATATATGTGTGCATATAGCAATTTACATGAGTAGAGTTTACTAAAACAGTAACGCTTGCCAGCTGTGAGGGTGGATGGGGTTTGTGGCATTTGAAGACATAACTGTGGAGCCTTGGGAGATGGAAACCTGGCTACAGTGTAGGAGAATATTAGGTGAGTTCACATCCATTTTCTGTGTAGGTAAGACTAATAAAACTTAAATTTGCCACATTAATTATAGATTCACACTCACCTTTGTTTATAAGCCATTTCTATGACTGAAATGAGGGAAAGTAGCTTACAAGTGGGAAATGATCTTTATCACTGATTAGTTCTTCCCATCTGTGTCTGACCATGTGTTACCTTTGACCACTGGGACCCATGGACCATTGCTCTGCCAAGTGGGAGGTACCAGCCCAGCATTTACTGTGGACTTTATGTATCAGGAAAGGGTTCATTCTGGCCTCAACACTTAATTCTCATGATAGCCCCATAGTCTTGCATATATCAGTCAGGAAACAAGTTTAGAGAAATGAAGTTAATTTGAACAGGAGCCAAATTAAGAGTTAAATTTAAAGAGTCTACTTAATTTAAATCTCCATAATAATATTATCTCTTCCCCACAGGCACACTGTTTTATTACAATAAGAATAAAGGAATTTTAGCACTAATTGGGGTACTGGTTATAAGTTTTTTTTTTTTAAGTACTAGGGTTGAAGTGTAAGGCATCATGCATGTGAGGCATGCATGCAAGCTGGGTCTTATTATGTAGCCCTGACTGCTCTTGAGCTTTCTTTCATTTTCTGCCTGCTTCTAGAGTCTGGGATGATAGTGCATGTACTACAGGAAGAATCTGTTTTGGGTATACACTGTATCCTAGACTTAGATTTATAGTAGACTTATCTAAAGAGAAAAACAAATTTGGTTAGATGGCACAGACCTATCTACATGTATTCCAAGCATTTGGGAGGCTTAAGCCAGAGTGAAATGAAACCCTGTCTCAAAAACCATAAAGGTGGGACATGATGGTGTACATCCACTACCCCAACACACTTAGCAGGCTGAGGCAGGAAAACTGGGGAGTTCCAGGCCAGAGTAAATCCTGTCTCTAAAAGACTCAATTAGACAGGTATGGCGGCACACAAGTTTAGTCTCAGTATTCAAGAACTAGAGGCAAGTGGATCTCTGTGAGTTCAAAGCCAACTTGGCTTACATAGTGAGTTCCGGGTGAGCCAGGGCTACATAGCAAGACCCTAGAGAGAGGGCGGATGGGAGGAAGGAAGAGGGAGAGAGAGATATGAATTCATATAGAACACATGGAATACTTTATTTTCAAGGCAATATAAAAATACCTTGAAGCTTTATATGATTTTAAAATAGAAAAAGGAGGGAGATCAAAATCAGCCACAAGTTTATATGTAGCTACTGAGACAAGAATCACTATCTGGCTTTAATGGCTGTTACTGTTTATTATAATTCTCTTTATTTCAGCTGTGTAACCTTGTACTCATAATAGACTATACTGATGTTAGTTGTCAAGCTCTTAGCAGTGGCTATATTAAAGTGTTCATTTAAAGTTGGAGATGTTCTAGGAATGCTGGACTATGGAAGACTAGTCTTTGACCTCAGTGTGTTATGAATTGTGTTTCCACAG
Seq C2 exon
GTTTAAAGACCATCCAACACTAAATGACAGATATTTGTTGTTACATCTTTTGGGTAGAGGAGGTTTCAGTGAAGTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694:ENSMUST00000106939:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(5.7=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types