BtaINT0148525 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47653394-47655161:+
Coord C1 exon
chr19:47653394-47653491
Coord A exon
chr19:47653492-47655079
Coord C2 exon
chr19:47655080-47655161
Length
1588 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
TTTATATTCTGTTTCCACAGATT
3' ss Score
10.79
Exon sequences
Seq C1 exon
GAGGAAGCAGAGATCCAGGCAGAGCTGGAAAGGCTAGAAAGGGTTAGAAATCTACATATCAGGGAACTAAAAAGGATACATAATGAAGATAATTCACA
Seq A exon
GTAAGCAACTTGGGGGTATGTTGGGTTGGAGATTGCTGAATACTTTCTGACATGAATTGTCCAGAATGATATTTTTGCTTATTGTAAATTTGGTAAACCATTCCATGGTGTATTTAACTCTGTTGTAGGTGTAATAATACGTTTTATGAACAAAATTATGATTTTCATTGGTTTAAATACATAAAAATATATTAGGGTTATATATTAAGTATATGTTTATACAAACAGCACTTTTACGCACATAGAGCTCATTAAGGCAATGTAACTTTGCAGTCGCCAATGGTTTAGGTACACTGTGTGCTCAGATTTACCCTCCTAGCCTTCCTGAAGCGGAAGCATTAGGGTGGCGGTGGGGTGGTGTGGAAAGACGGTTGGGTTGAAAATGACACTCAGTTTCTGAATGACCTTTATAGGTCTTTAAAGTGTTGAGATTTTTAAGAAAGACTCAAGTTCAGTACATTAATTGTAGATAAATGCTCATCTTTGTAAGTCATTTAAGGAATTAAAACTGTGAAAAGTAGATTGTAAGTGGCAAGTGGCTTCTAACGATAATCCTTTTATTCCCCCCACATTTTTCTAATTCTGAAACATGGAGGTTTTGGCATAGCTACAGCTTGTATATTTTTGTTTGGCCAGAGTGAGCCATGGACTTTGCTTTCTGTAAGTGGCAGCAACAGTAGCTACCGTTACTGTGCACTCTCTGTGTCAGGCAGAGTGCTAAGTGCCCCTGTGTTCTGTTGTTTAGTTGTCACAGTAGCCCATTGCAGTAGGTCATCTTCAATACATAGATCTGGAAAGTGGCTTAGAGAAATTAAGTTAACTTGTCTAGCGACTAGTGTGGCCAAACAAAGAGTTGAGATGTGGCTCTGACTCCACAGTGAAATCCTATGCAGTGATATCACCTCTCTCCACAGGTGTGCCACTGTCTCAAAATCAAAATACTTTCAGGATTATTAGTAGGGCTGATAAGGAACTAGGTAGAAACACCTAAAAGTTATTTTTGCCAGAATCTCTCATTTCTTTATCTTATTGCTAGAAAATGATACAAGATGGAATCCTATATGGGGAAAACAGTTACATCATGAAGATGTAAAGAGAGAAAATGAATGCACGTAGAGCATGTGACTCACTTTATAATGAGACCTGATCTTAAGGCCATGGAAACTATCTTGGGTTTTTATTGTATGTTTTTGGATGGAGGGGACGTGTGGTTCTTGAGGGGTTTGCAGGACCCTAGTAGCAGTTTGGAAATCCCTGGTCCAGTGTACAGCCCTGCACCCCCCTCCTTGATGGCAGGGCAGAAAGAGAGGGAAGTCAACAGGGGTCACTAGTCTAATTGTGGCTGTGCTGCAGCTGGCACCTGGGTCTCACGACTCCACAGCTAATGTTGTTCATCATAGTTACGCCTTCTCTTTGAACCATAGAGTTTTTCCTATGCTCAGAATTAGCTATATTGCGGTGATTGCCAAACTGTTGGCAGCATCTGTAATTGTATGTATAACACGTCAGACATTCTGGAAATTTCACAAACAAGGAAAATTGTGTAGTACTTGACCTCAAAATGTTGTTTTATATTCTGTTTCCACAG
Seq C2 exon
ATTTAAAGATCATCCAACGCTAAATGACAGATATTTGTTGTTACATCTTTTGGGTAGAGGAGGTTTCAGTGAAGTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713:ENSBTAT00000020882:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(22.5=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development