RnoINT0151400 @ rn6
Intron Retention
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93478019-93480021:+
Coord C1 exon
chr10:93478019-93478116
Coord A exon
chr10:93478117-93479939
Coord C2 exon
chr10:93479940-93480021
Length
1823 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
TATTTACTTGGTTTCCACAGGTT
3' ss Score
9.11
Exon sequences
Seq C1 exon
GAGGAAGCAGAAATCCAGGCAGAACTGGAAAGGCTAGAAAGGGTTAGGAATCTACACATCAGGGAATTAAAAAGGATACATAATGAAGATAATTCACA
Seq A exon
GTAAGCAACTTGGGGCATAATGAGCTGTAAATTGCTGAATATTTTATGTCATATATGGCCTAGAGCGATGTCATTACTTTTTTTTCCAAATGAGTGTATTTAGTTCCTTTTTAGGATATAATATAATTTTATGAACAAAATTTCAATCTTCTTTGTATTAAGAAGTAAGGTCATATATGTGTGCATATAGCATTTTACCTGAGTAGAGTTTACTAAAACAATAACACTTGCCAGCCCGGATGGGGTTTGCAGCATAGATGTAACTGTGGAGATGGAAACCCACCACAGTGTGGTGCTGGAGAGAGGATTAGGTGAGCTCACAGCCATTTTCTGAGTAGGTAAGGCTAATAAAACTTATATTTACCACATTAATTATAGATTCACACTCAACTTTGTTTATAAGCCATTTCTATGATTAAAATTAGGGGAAAGTCGCTTTCAAGTGGGAAATGTTTTTTAATCACTGATTAGTTTTTCCCCATTTAGATCTGGCTGTGTGTTTTGTTTGACCAGTGTGAGCCTTGACCCATTATTCTGCCAAGCAGCATTTACTGTGAACTCATATATCAGCAAGGAGTTCAAGTGCTCTTCTGGCCTCACACCTAATCCTCGTGACAGCCCCATAATCTTAAATACATCAGTCGGGAAACAAGTTTAGAGAGATGAAGTTAATTTGAACAGGAGCCCAAATTAAGTGTCAAATTTAGGTCTACTTCATTTAAATCTCCATAATAATATTATCTCTTCCCCACTGCTTTCTTAAATTCAGAATAAAGGAATTTGAGCCTTAGTATGGGTACTGTGTATAAGATTTTTTTTTAAGTACTAGGGTTGAAGTATAAGGCATCATGCATATGAGGCATGCACGCCAGCTGTCTCCCTAGCTGTCTTTACACTTTAGGTTTTGAGATAGGGTCTGAGAGGGTCTTATCATGTAGCCCTGGCTGACCTTGAGCTTTCTTTCATTTTCTACCTGCCTCCAGAGTCTGGGATTATATTGCAGTGCATGTCCTATGGGAAGAATCTGTTTTGGGAATACACTGTATCCTAGACTTAGATTTACAGTAGCCTTATCTAAAGAGAGTAAAAACAAATTGGGTTAGTTGACACAGGCCTATCTGTATGTATTCCAAGCACTGGGAGGCATGTGTCTCAGAAGCAATAAAGGTGGACATGATGGCGTACAGCTGTCACCCCAGAACACTCAGTAGGCTGAGGCAGGAGAATTGGGAAGTTCCAGGCCAGAGTAAACCCTGTCTCCAAAAGACTCGACTAGACAGGTATGGCAGCACACAACTTTAGTCTCAGTATTCAGGAGCTAGAGGCAAGTGGATCTCTGTGAGTTCAAAGCCAGCTTGACCTACATAGTGAGTTCCAGGTGAACCAGGGCTACATAGTAAGATCCTAGAGAGAGGGAGGGTGGGAGGAAGGAAGAGGGAGAGAGAGATGAATTCATGTAGAACACACGGAATACTTTATTTTTAAGGCAATATAAAAATATTTTGAAGCTTTATATAATTTTAAAATAGTAAGAAAAGAGGGAGATCAAAATCAGTCACAAGTTAGGATGTAGCTACTGAGACAAGAATCAGCATTTGGCTTTAATTAATGGCTGTTGCTGTTTATTATAATTGTGCTGTTTATTTCATCTGTGTGATCTTGTGCTCACAGTTCACTATGACGATGTCAGTGTCAGATTCTCAGCAGTGTCACAATGAGGTGTTAATATTTAATGTTGGAGATGCTATAGGAATGTTGGACTGTGGTGTTACGTGTGATGAATACGAGGTGTAGGGTGTTATGTATTTACTTGGTTTCCACAG
Seq C2 exon
GTTTAAAGACCACCCAACACTAAATGACAGATATTTGTTGTTACATCTTTTGGGTAGAGGAGGTTTCAGTGAAGTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285:ENSRNOT00000066484:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(5.7=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]