BtaINT0148506 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006918 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:25477724-25480059:+
Coord C1 exon
chr2:25477724-25477821
Coord A exon
chr2:25477822-25479977
Coord C2 exon
chr2:25479978-25480059
Length
2156 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTTTTTCCCCACCCTTAAGGTT
3' ss Score
8.72
Exon sequences
Seq C1 exon
GAAGAGGCAGAAATCCAGGCAGAACTTGAACGTTTGGAAAGAGTCAGAAATCTTCATATTCGAGAGCTCAAAAGAATAAATAATGAAGATAATTCACA
Seq A exon
GTAAGTCATTATTTGTATTTTACAGGATTACATGATAAAAGATTATCTCCCCTTGGAGATCATAAACACAGTATTTCCTTGTTGAGGGACTTCATCATAGAAATAAAGTCCTTCCCATGACTCAGAAGGCCTTGTATGATCCGGTCTCAGGCACCTCACCACCCCACCTCTCTCATCTGCCTCTCACTTATATGTCATATATACACTGGCTCCCTTGATCACATGTCATTCCTATCTCAAGGCTCTTCTGTTCTCCATTTTCTCTGCCTGAAATATTCTTCCTCTAGACATATGAGTGGCTTACTTATTTCACTCCAGGTGGTCACTAGAAAGGCCACCCTGTCTAAAATATCAGTCCTGGCGTTACTCCATCACCTCTCTCAGTATCCTTACCTTGCTTTTTATTCTTGGCATTTATCAGTATTTGGAATTACATTTTTTTTCCAGTTCTTTTATCTGTTTCCTTCACTGGAATGTAAGCTACATGAGAGCAGGGATTTAGTTTTGTTCTTGCTATATCCCCCAAACCTAAACCTGTTTCTGGCGTATGGTAGGCACAGAATAAATATTTGTTGACTAAATACCAAAGTTAGTGTTACAGTAGTGAAGAAGAAATCGTTTCAGCTAAAGGGATTTCATTAAACCGTGTATCCAGCATTGTGTAAAGAAGAAATAGAAGAGCAGTTTAAATTATAGTCTCTGTCCTTAATCCCTAATCAAATTTATTTAAACGCTAAAGGAATTCAAAGAGAAAATGCCTGTGGACAGGTGGGAGCTTTATGAGGAAGACAGAAATAAAGAAAGGCATTAATTGGATGTAGTCTATGTAGAGGACAGGAAGGATGTCTTATTTACACTTTCAGATTTATATAATTTAAATCTTCATGACCTAAATGAGTGTCAGAATTGGAAGTGGCCTATTTCTGCCATGAAATATCTTGCTTAAAAGAAGGCCTGTTTATGAACATAATCATTCCAATATATAAGGTAAATGAAATAACATAGTTATGGAATATACTTAATTATACCAGATAAATTCTAATAAAGCAGATAAGTCAAAGCTAATTTATAGTTGACTGTTCTGAAAATTATGCCCAAGCTTGTTTGTGGATATAACTTAATCCACTTGATGAAAATTAAATGAATTGTTATATTTCCCTTTCTTTTTTTTTTTTTTTTTTTTGGCTACATGGCTTGTGGGATTCTAGTTCCCCAACTAGAGATTGAACATGGGCCACGGCAGTGAAAACACTGAGTCCTAACCACTGGACTACCAGGAAATTTCCTACATTTTGCTTTAAAACTAAACAGAAATCTCTAATAATTCTCAAGAAAAACTTAAATTGTCAAAGTTGTGTTGACATTGAATAAAATACCATGTATATTTTGTATCTGAGACTATAAAACTGTCATTGACTTTTCCCCCTCCCGTTTAAGAATCAAGAGTGTACATTTTGGAACCATGTTTTTCTGTGAAACCCTGCCATGTATTAGCTGTTGACCCTGGACAGTTACTTAACCTTTCTGTGCAGTAGTGCCCTCATCTGTAAAATAGAGGTAGTAGCAGGGCCTACTTCAGAGGGTTAGTTAAGAACCAAATGAGATAATACATGTGAGTGCTTAGTGTGTAGCAGGTGTGATAAACCTTAAATAATTTTATTTGTGGTGGGTTTTATTTTTTTTTTAAGCATTTCTTTTTTGATTGGGAATTAAAATTTTATTTGTAAAAGGCAAAGACTATAAAATTTAACCATGAATGAAAGTCAGCTTATAATTATTTTTAATCCTCTGTCAGTACTATAAAACTTAATTAAAACTCCCAGATAAAAGTATGTTTTCATAAGGGAAGTATTTCCTGATGAATAGATACAGGATTTTATAAAGCTCTTAGTAATACAGTAGTTGGTAGGTCTTTATCACAGTGCTATAATTGGTCATTGAACTTGAATATTCAGCTTAAGAGCTGAATGTTGGGCTTCGTGAACACCAAAGCGCTGAGATGGGTGATAGTCATGCAGGTAGAGAAAGAAGTATGGAATAGAATTCAGAATAGCAGGGAAGAGAGCCAGGAGTAGGGTAGAGCACAGCTGTGCTGTGGACAGGACCTTTTCGTGTGTGTTTTCATGTGCATGAGTGTTTTTTTCCCCACCCTTAAG
Seq C2 exon
GTTCAAAGATCACCCAACGTTAAATGAAAGATATTTATTGCTCCATCTGCTTGGTAGAGGTGGCTTTAGTGAAGTATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006918:ENSBTAT00000009090:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(5.7=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]