GgaINT0048983 @ galGal3
Intron Retention
Gene
ENSGALG00000009569 | F1P396_CHICK
Description
NA
Coordinates
chr7:19604048-19606793:+
Coord C1 exon
chr7:19604048-19604145
Coord A exon
chr7:19604146-19606711
Coord C2 exon
chr7:19606712-19606793
Length
2566 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
3' ss Seq
AATCTTTTTTTTCTTTCAAGGTT
3' ss Score
9.62
Exon sequences
Seq C1 exon
GAGGAAGCTGAAATACAAGCAGAACTTGAACGTTTGGAAAGAGTTAGGAATCTTCACATCAGAGAACTGAAAAGAATAAATAATGAAGATAATTCACA
Seq A exon
GTAAGATTTACTGTCTTGATTTTGCATGTCTACTTTTAAAGTAATGCTCTAAAATCAAATTTTGTTTGTAGGATATAAGCAGGCTCATGATTTTTTCTTTGGTTCCTTGTTTGTGTATATTTTAAAAAGCAGCTTACTTAAGCTTTACCAAATAAGAATTTTTTAAAAAGTTTAATAGTTTACTGAATATGCAGGGAATAATATACATACACAGATTTTAACACAGGAATGCTAAGATTTGCAATACCACGTCACTAGGGGAAAAAAAACTTGGAACTAGGAAAAAATCTTGGAACCTTCAGCTGACAGTAACGCAAGGAAATGGTGGGGAGGTTTGATGCAGGAGGAACTATTTCATAATGCAGCTAAGTCAGTTAGTTTTATTGCACCGTAATTTACATTACAGGTACCTGATAGGAGAAAGACAAACACAGGATCTTCTGTGTTATGTTAAATTCACTATATACTTAAGCTTACATGGCAGCATATCGTAATGTTAAATTGGCATTTAAAGTTTACTTTAACTATGTAGATTCCAAAGTAGTAATTATGTAACTAATAAAGTTACTGTGTTTTCCATGGTGGGGACTACATCTCTAACACTTAGTGTTTCATCAAGGCTTTAAGGTGGCACTGTTGCTTCCAAGAAATCTGTTCTGCCTATCTGCAGCTATTTCTTTATGCCCTTGCCCTTTTTCTTTTCACATGCCAGCAATAGCATTTCTCTAGAAAACAGCTGCTGGAAGTTGATCCAAGTTAAATTTCCAGCTCCCATGGTTTCTTTTTCTGGATTAATGTTAACTCCAGCTCAATCTTCTGGATTAGTTCTTCCTCAAACTAGCCCTAAACCCTTCTTTAAAGTTTTCTGTGGGGTATAGTTGGCAACTGGCCTTAGATTCATGAGTATAAGTATCTCATCATTGTACTGAAGATGTGTAGAGTATTCACTGTCCTTCCGCTGCTCTTCTCTCCTTGATAGGTGGATAAATGTAAGAAGTAACATCTTACACAACAAACGTTAATTAGGTGCATCTCTGAGATTATACTTTTGGATGCAATTCCAGAATACTGTTTAATTATTTCTTTTTTTAAAGACCACTTTGCATTTCAGAAATCATGAACAAACTTGCTAACCTTCTTGTTAGTACCAATTTTAGTAATATTTTATCTTTGGTTCTAAAATGATACAGTAGCACCATGTGAGATCACCTATCAGAGTGAGTGAAGAGACTTGGAATCTTTTGTTTTGCATGTATCATTTACTATCTATTTGCCTAAATATTTACCCAAGTTTTTGTTCTTTGAAGAACTTTCTAGAAAACTTGTATTTCAAAAAGTTTAAACTGAGAAATCCAGTTTCTTGTTGGAAGGACAATCAGTCCATCATCTTGGTTTAAAGGAGTTTGGCAGCTGATAAGAAGCATATTTTTATCTATTCCATCCATTTCCAAAGCCTGAAAGAGCTGCAGTAGCTATCATGTCTCACTGAATCCTTTGTATTCTTTTCCTTCGCTGTCGCTAACATGAGCAGTCAGACTCTGTGTGACTGGTTTGATTGAAGGATATGTTTTGTTTTCTGCGTATTTCAGGAGAGAATGTGGTGTTTATCCTGCAACATCATTTTGCATTTGGAAAGAGTTTTTCCTCCTTGCTTTTCATAAGAGTGTGAGCAGATACTTAGTCATTTGGCATGCTTTCCCCTGTGTTGCTGTTTGTTATTTTATAACTTCTCAGTCTTACATAAAAGTCATTTTGTTGGAAGATGAGTATGTACAACAGGTCTGGTCAAGTTTCGTGTGAAACTGGAAGTGTATCTTCCTCATCAGTTCCAGAAGAATCAGCAGAAGCTGACTTCTTGCAAATTGGGATCAGTGAGCAGAGCACTGCTGTATCTCATTTCATAAACCTTTTATGCAAGGAAGGGTTTGGGATTTTGGCAGGATACCTGCTGTAGGATGTAGGGAGGAGAACCACAGCCCTCTAGTAATACAGACTGCAAGGCAGTATTCAACAACATTTAGAATGTCAGCATTGCATGGTTTCTGGGCATGTTTATTAATAAAGGTTGAATGAACAGATCGGAGAGATGAAAAACATACTGAAATTCTGTGCTTACTTCTGATTGTTCAGACAGTATAGAAGCAGAACTCATGCTATGGAGTGGAAGCAGGTCCTACTGATTTTACTGTTGACAATAGTGATGATGATTACTGTTGTTAATAATGGTTTTGTTAGCATTTTTTTAGTTAGCATTTATAGAGAGTGGGTTAAGGGTGTTTTTTTCTTATCTTAACAAAAAAAGAAAAATGACAAAAAGTTTGCCAGAATTAGGGAATTTGACAATGTAGTTGTGATAGTTTTATGCTAAATAATCGAAAGATACTGGAATTTACTGTGTTGTATAACTGTGCCATAAAGTTGCACATGGTTAAATATTCTTCAGTATCTTATATGTCACTAATAGAAAGAAAAGTTCTGTTTGAGAAGTAATACTCAGATACTTACATTTCGGGCTGTGTTTGTATACCTTAAACAAAAATGAATTAAATCTTTTTTTTCTTTCAAG
Seq C2 exon
GTTTAAAGATCACCCCACATTGAATGAACGGTATTTGTTACTCCACTTACTTGGCCGAGGTGGCTTCAGTGAAGTATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009569:ENSGALT00000015585:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(6.2=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]