MmuINT0160567 @ mm9
Intron Retention
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70562059-70563634:-
Coord C1 exon
chr2:70563537-70563634
Coord A exon
chr2:70562141-70563536
Coord C2 exon
chr2:70562059-70562140
Length
1396 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTTTCTCTGCTCTTTTAAGGTT
3' ss Score
11.57
Exon sequences
Seq C1 exon
GAAGAGGCTGAAATCCAGGCGGAACTGGAGCGTTTGGAGAGGGTCCGGAACCTTCACATCCGAGAGCTGAAGAGAATAAACAATGAGGATAATTCACA
Seq A exon
GTAAGTCCTAAAGTCACACATGACAGGAGCCCCGGGGAGAACAGAGAGACTTTCCTCCTCAGCCACCTCTGTCACAAGGAAAGCTTACACAGTACCAACTTGGATGTCTGTGCGCTCTGCTAAGCCCTGTACCTCCCTGTCCCGTCTCACCCCCCCACCTGATACACTCCCTCTGGACATCTGAAGCGGCTTTCTCTTTATTTCACACCAAGTGCTCTCCGTGCAGATGGCCTGTCTGAGAGCCATCTCTGCTTCACCTCATTTCCCCTTTCATTATCCTTTTCTTTAATTTCCCATGGTAATTAGTACTACTGGGGTTACAGTTTACTTTTTAGTTATTTATTTTGTCTCTTCCCCCTAACCTGTAAACTTTTTGAGCAAAATCATTATTTTGATCTTATATCAGACATACCAGTAAAATTGTACTAATGTGGTATTTTAAAGCGATTGCTGGCAGAGTGTTCATTTGGGAATTTTTCTACAAAGCCCTTCCATGTATTCCTGTTACACTTGTACAGGTGGGCTGCTCATTCTGATGAGCCCTTTCTGGAACAGAGACACAGTAGCGGGTTTTGTTTCATAGGATTGGGTGAAAACTAAAACAATGAACTTACATAAATGCTTACTGTATAACCAGTACGATGCATGCCACTTAGTCACCAGAGCATGTATTACTTAGTGTATCTCAGGTACAAGCAACATTAACTAATAATGGCAGTATTACTTGAGAGTGATTTTTTATAAGCTTTTTAAAAATTTTTACTTTAAAAATTATGAATAAAAGTCCAAAGATACTAAGATGTAACCATGAACAAAGACCAGTTGATAAATTTTTTTTAAAAAATAAAAATCAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCTGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCCTAACGAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATGAATAAATAAATCTTTAAAAAAAATAAAAATAAAAATAAAAATCAGTACTATAAAATCTTGATTACTTATAACTCACTATAAAACTATTTTTGTGATAGAAGTGGTTTATGAGAAATAGCGGTCTCCTATCAAGCATTGGTGGTTATTGGACTACTGAGTTATATACTTTTATAGTTGCAGTTTGTAAGTGCTAAAGCATAACGCAGGTGGTATACTATGTAGAAAGACTGAGAGAATAGAAGTAGCTACTGGCTGGTATTTGACATTAACAGCAGAGAAACTGAAGCAGACATAGCTAGGATAGTCACGAGTGGGCGTTACTGTACTCAGAACTGGATTCTTTTAATGTGCCGCAGTAGTTTTTTCTCTGCTCTTTTAAG
Seq C2 exon
GTTCAAAGATCATCCAACGTTAAATGAAAGATATTTATTACTTCATCTGCTTGGGAGAGGCGGCTTTAGTGAGGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997-Tlk1:NM_172664:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(34.0=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: