MmuINT0162660 @ mm10
Intron Retention
Gene
ENSMUSG00000045631 | Tmprss12
Description
transmembrane (C-terminal) protease, serine 12 [Source:MGI Symbol;Acc:MGI:1922252]
Coordinates
chr15:100282232-100285394:+
Coord C1 exon
chr15:100282232-100282427
Coord A exon
chr15:100282428-100285125
Coord C2 exon
chr15:100285126-100285394
Length
2698 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
GAATATTTGCTTTCTTTCAGAGA
3' ss Score
8.7
Exon sequences
Seq C1 exon
ATTGTGGAATAGCACCACTTAGAGGTGCAGTGGAAGGGTCTCGGATTATAGGAGGTTCGCAAGCTGACACTGGTGCGTGGCCATGGCAGGTTAGCCTGCAGGTTCAAGATGGCGATATTCTTATGCATGTATGTGGTGGCGCCCTAGTGAGAGACAGGTGGGTCCTCACAGCTGCTCACTGCACAAAAGAGGCTAG
Seq A exon
GTAGGTATTCATAATACAATTCTCATTTTCTTCTCTCAAGAATAGTTTGAAATGGTCCTGACTTTAGTTAAGCATTGTGTCTATGGGATGTCTACATATATATGCATATATATTCATATTCTATTTGTGTATGTAAAGACATACGTTGTTCATGGGTACAAGGCACTTCCGGGGTTAATCTTTACTATTTGAGGTCTGACAGAGACTCTTTGGCTTCATTTGCTTAGAGTCATACAACCCACTTTCTTTTTTTTTTTTAATTTTTAAAAAAGATTTATTTATTCTATGTAAGTACACTGTAGCTGTCTTCAGACATACCAGAAGAGGGAGTCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGAATTTGAACTCAGGACCTCTGGAAGAGCAGTGAGGTGCTCTTACTCGCTGAGCCATCTCTCCAGCCCACAATCCCACTTTCATGTGATTTCTGTGACCAAAACATCATTTCCAAAGCTGCCTCCGTGGCACATGGATGGAGAATTCTCAGTTTCCATCCTAGTGGTTATACGGTATAGGGCAATTATGACAGACTTTCCTAAAGTGTCTCTTTGCTTTTTCTAAAACAGTTTCTTTTTTATGCATGTGAGTGGTATGTGTGTATGTATGTATGTCCACTGTGTGCATCCCTGGTGCCCAGGGAAGCCAGAGAGGGCATCTGGAATTATAGATGGCTTTGAGTATCAGAAGGATGCTGAAGGAGAGCCCGAGTCCTCTGCAAGAGCAGTAATGCTTTTGACACCAGCCAGCTCTCCAGCTCAGAAGCATCTCTTCTAAGATGCTGGTGAGCTGTGGGTGTGTGTGTATGTGTGTGTGGGGGGGGGGATGGCAGAATGGCACTTTACTCTATATATGACTCTTTGCTAACTAACTTTCTCATCAACTTTTATGATGGATTATCTGATCGGCTCAGCCTTGCTTTTCACTTTATTTGAAAGCAACATTGTGCAGTTTGTTAATGAACCATCCTTTGGTCAAGGATCCATCCCTGTCCCACAGAACTCCAAAGGGTTTGGATCATGTATATTAATTAAATCAGGGCACCTTGATGACAAAGTGGGTAGATCTTGTACAAGCACATAGGTATTTGCCGCTAAGCACCAATGTACACTTCTAGCAAAAGGCAGCGGATTTTTGCTATTCTGTGGTCCTGGGGGCTGAACCTAAGGCTTCACCCATGCCAGGTAAGTATGGAGCTCCTATTTCCAGCCATGCATATAACACTGAAAAGAGTGTGTGTGGAGGGATAGAGTTGACGCCCATTATCATTTCTCATTTATCTGTTTATTTTCTTTTATAACTGTGGTATAATTTCATGCCTCTGTGGGATTATCTAGGTTAGTTGAAGCGGGATCCACCCTGAGGGAGGTGACTTTTCTTTCTTAGCCTGAGTGAAAAGGAGAATGGAGCTAAGCACTGGCTGGCCATCTGCCTCCCTCTGCTCCCTTCCTGACAAACGAGTCTAGCCTCCTGAAGCTCCTGCCTCCTTGCTTTCTCTGCTGTGATGGACTACGACTGGGAACCAGAATAAAGCCTTCTCCCTTCCATTGGTTTTATTGGGGTAGTTTATCCCAGCAGTGAGACAACTAGTAAAACTTTGTCTCAAAAACCAAACCAAACTGATACAAAAAATACCAAACCCAAAAACCAAACAACAACAACAACAACAACAACAACAACAACAAAACCCAAATAAATCCTGTCTCATGTTAGAGTCCTATATTCACCTGTCTTCTTTTTAGTTTAATTTTTAAAAATTCTAGTGCTAAGATCCATATGTTTTATTCTAGTGTATTTCCAAAAATGAGGGGCCTGAGAGATGGCTCTGTGGTTAAAAGCGCTGGCTACTCTAACCGAGGACCAGCTTTGAATCGGCAGCTTACAATTCCCCGAGACGCCAGCTTCAGGGCATCTCATGCCCTCTTCTGGCATTCTTGGGCATCAGGCACACACATGGTACACAGATATAGATGCAGACAGAAAACAGACAGTTGATTTTTAAATCTTAAGTTAAAAAAGGAGAGGACATATTTTCTCACATGCTTATCACATAGCTTCAAGTTTTAAACTTACATCTTTTAACAATCTTTATCAGTGTGTATTAATTAAGCATGCCATGACATTTTTATACATGTATGTAATGCATTCACTCGTGCACCCCTCTGGCTCTCTCCCATCCATGCCTCATGGGTGCTGAGCCTGCACTGTGCAGGGTTAATCTTCTCCTCCCACTATTTCAAAGCAGATTCCAGATCTATCATGTTGCCTGTCATAAAGACAGCACCTCTTATTGAAAAGAACTTGAAGTTTTTAATCCATTTGGGGTTTACTTTGGTGGTTTGTGTTATTTCAGGGATTTAACCTTTTCTTTCCAAATAGGTAGTTGTCTCAAAACCACGAACGGAGTGACTTAGCCCTCCATTCACTAGTAGTTCATGCTATCCTAGTCAGCCATGAAGTTCTCATGTGCTGGAGTCTGGTCTGAGTATCCTGCCCCATTCAATTCTCTCCACTGCTGTGTCATGAGGTTTGGTCTTTTATTTTATACTCTATGTCACATGGAAATACGCTTACAACTTTGTTGTCAGGCTGATATCTAGGGGAAATGAAGGAAAATTATTTAAGTGGACCTCTGGGTAATAAGAATATTTGCTTTCTTTCAG
Seq C2 exon
AGATCCTCTGAAGTGGAGAGCAGTGATGGGGACCAATGACCTCACCCGGAGCCCCTACCACAGCAGGAATATACGAATCACAGACATCATCATACCACCAGATTTCATTATGGAAACTTTCGTAAATGATATCGCACTGTTCCGTTTAAAGAGAGCTGTGAGGTATAATGACTATATTCAGCCCATTTGTCTACCTTTTGGTGTTTTCCAAAAACTGGACCAAAACACAGCGTGTTTTATAAGCGGCTGGGGAAGAACCAGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045631:ENSMUST00000096200:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.2=75.8)
A:
NA
C2:
PF0008921=Trypsin=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types