RnoINT0153333 @ rn6
Intron Retention
Gene
ENSRNOG00000031099 | Tmprss12
Description
transmembrane serine protease 12 [Source:NCBI gene;Acc:100362912]
Coordinates
chr7:141955067-141958402:+
Coord C1 exon
chr7:141955067-141955101
Coord A exon
chr7:141955102-141958133
Coord C2 exon
chr7:141958134-141958402
Length
3032 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
GAATACCTGCTTTCTTCCAGCGA
3' ss Score
6.33
Exon sequences
Seq C1 exon
GTCCTCACAGCTGTCACTGCCACTAAAGAGGCTAG
Seq A exon
GTAGGTATTGGCGAGTGTGACTCCCATTCTTCTCTCTCTTGGGGATCAGTTTGAAATGTTAACTGGAATCTTAGGTAAGCGATTGTGTCTATGGGGAGTGTGTGTGGTGTATTATTATATATGTGTGGTATACAGTGATATAATATACACACCAGCATAGTATATAATATTCTTAAGATATGATTACACGCAGTTTGTTTGAAATGATGCCTTAATCACAGTTGGCGACTGTTTCGTGTGGATAGTGTATAGGGGTTTGACCGGGCCATATAGTCTGTTATATATTATTACTTAGTGTAAAAGTAACTATACACAAGTGGAAAATACACAGTTAAGTGACTGTTGCTGTGAGCCTGTACAACCATATGCGGTGGTTTGCAAATGCTTGGCCAGGGAGTGGGATGATTAGAAGATGTGGCCTTGTTGGAAGAAGTGTGTCACTGCAGGGGTGGGCTATGGAGACCCTCCTCCATAGCATGCCTGAGGATGCACAGTCTGTTCTCAGCTCCTCCTGCACCATGCCTGCCTGGATGCTGCCATGCCCCCGCCCTGATGATAACGGACTGAACCTCTGAATCTGTAAGCCAGCCCCAGTGAAATGTTGTCCTTTATAAAGTTTGCATGGCATCTGTTCACGGCAGTAAAACCTTAACAAGACACCATACATCTAACTATCTATTTGTATATGTAAAAACATACTTTGTTTGTGGGCTTCATAAAAACAAGGCAGTTCACAGTTAATCTTTATTATTTGAGCTCTGACAGAGACCCTTTGGTTTCATTTGTTTAGAATCATAAAATCCCACTTTCATGGGATTTCTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTTCATGGGATTTCTGTGACCAAAACCTAATTTCCAAAGCTGCTTCCATGCTGGGTGGATGCAGCTTTCTCAGTTTCCATCCAAGTGATCATACGCTATGTGGCAGTTATGCAAACTTTCCTTAGAGTGCCTTTTTCCAAAATAGTTTATTTTTATGCATGGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATGTATGTATGTATGGATGGATGGATACCATGTGCATCTCTGGTGCCCAAGGAAGGCAGAGAGTGACAGACAGCTGTGAGCCATCATAAGGTTGCTGGAAAAAGAACCTGGCTCCTCTGCCCGACCGTCAGGCTCTTACCCCCGAGCGTCTCTCTAGCTCAGAAGCATCTCTTCTGATGTTGGTGAGCTGGGACGAGGAATGGCAGCACGGTCTGTATTCTATACATTAGCCTTTGCTGTCTACCTCCTATTGTAATTAACGCTCTCTATGATGAATTATCCGATCAGGCAGCCTAGCTTTTCATTTTAGGTGAAAACGGTGCCCAGTTTATTAATGAACCATACTTTGGTCAAGGGTCCATCCCTGCCCCACAAAACTCCAAAGGGTTCGGATCGTGTATATTAATTAAATCAGGACACCTTGTGGCAAAATAAGTAAATCTTGTACAGGCACACGGGTATTGCCTCTGGGCACCAACACACACCCAGGAAAAGGCAGTGGTACTGGGGGCTGAACCTAAGGCTTCACACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATGCTGAAAAGAGTGTGTGTGTGGGGGGGGAGGATGGAGCTGGCATCTGTCACAGGGCAGAACCTCAGGGTTTCCCTGTGATGCCGGCTTCCGCCCAGCAGAAACAACCATTGGGATGTAGCTGTCTTTGTTTTCATTTCTCATTTATTTATTTATTTTCTTTTATAACTGTGGTATAATTTCCATGCCTCTGGGCATGTCTGTGGGAGGTTAATGAGGTGGGAGCCACCCTACCTGAGGGAGGTGACTCTCCTTCCTTAGACTGAGTGAAAAGGAGAAAGGAGCTAAGTATTTGCTGGCCTCTGTCTCCCTCTGCTCCCGCCCTGATGATGTGTCTGGCCTCCTGATGTTCCTGCCTCCTTGCTTTCCCTGCCATGATGGACTAGAACTTGAACCAGAACAAACCCTTCTCCCCTACATTGGTTTTTTTGGAGTAGTTTATCCCAGCAACAAGACAACTAGTAAAACTTTGTTTCAAAACAAAACAAGATACAAAAAAAACAAACAAACAAAAAAAACCCAAACAAAAACCAAATAAATCCTGTCCCATGTCAGAGCCATATATTCACCTGTCTTCTTTTTAGTTTAATTTCCGTTTTTTGGAAATATACTAGAATAAACATCTGGATCTTAGCTCTAGAATTTTTTTTTCTTTTTTTTTTTTTTTCGTCCGAGCTGGGGACCGAACACAGGGCTTGTGCTCTCTAGGCAAGGCGTTCTACCGCTGAGCTAAATCCCCAACCTCCTTAGTCTAGAATTTTACGTGTGTATTAAACATGGCGTGACATTTTTATACATGTATGTAATGCATGCTGCACTCATGTGCTCCTCTTGCCCCTCCCACCCATGCCTTATGGATGCTAAGCCTGCCCTCTGCAGAGTTAATCTTCGCTAAGCAAATTCCAGAGCTATCATTTTGCCTGTAGTAGAGACAGCACCTCTTACGAAAAGAACTCTAAGCTTTTAATCCATTTGGAGTTTACTTTGGTGGCTTGTGTTATTTCAGGGATTTAACCCTTTCTTTCCAAACAGGTAGTTGTCTCAGCACCACGCAGGGAGTGACTGAGCCCTCCTTTCAGTAGCAGGACTTGCTATCCTAGTAGGCCATGACGGTCTCTGAGTCTGTTGAGTTCCCTGTCCCACTCATCATCTCTCTCCTCTGCTGCGTCATGAAGTTTGAGCTTTTTATATTTGTCACATGGAAATATACTTAAAACTTTGTTTTCAGTCTGATATTTAGGGGACATCTAGGGGAAATAGAGAATTGTTTAGGTGGACCTCTGGGTGATAAGAATACCTGCTTTCTTCCAG
Seq C2 exon
CGATCCTCTCAAGTGGAGGGCGGTGATCGGGACCACCGACCTCACCCGGAGCCACTCCCACAGCAGGAGTGTACGCGTGTCAGACATCGTCATCCAGCCAGATTTCATTCTGGAAACGTTCGTAAATGATATCGCACTGTTCCATTTAAAGAAGGCCGTGAGGTATAATGACCATATTCAGCCCATTTGCCTCCCTTTTGGTGTTTTCCAAAAACTGGACCAAAACACAACGTGTTTTGTAAGTGGCTGGGGAAGAACCCAAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031099:ENSRNOT00000041938:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(4.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]