MmuINT0172763 @ mm9
Intron Retention
Gene
ENSMUSG00000021614 | Vcan
Description
versican [Source:MGI Symbol;Acc:MGI:102889]
Coordinates
chr13:89827890-89845402:-
Coord C1 exon
chr13:89842523-89845402
Coord A exon
chr13:89833107-89842522
Coord C2 exon
chr13:89827890-89833106
Length
9416 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AAACTCTTTGTTTTTTTCAGGTC
3' ss Score
11
Exon sequences
Seq C1 exon
CTAAACAGAATATATCAGAGGCAACCACCATCGAAATGAATATCCTCGCAGAAACTTCATCACCCAGTTTATCCAAAGAACCACACATGGTACCTGACAGAGCTACACCAGTCATTCCATTAGCCACCGAATTACCTATTTTTACCACACACTTCCCTCCTGCAGGAAATATAGTCAATTCTGAACAGAAATCTGTAGTCTATTCTCAGGCTATCACAGGCAGATTAGCCATGGAATCACCCACAACTACTCGGAATACCATCAACTCTTGGGATCTGAATGACTCCTTGGCTTCTGGGTCAGGGCCACTTGGAATGCCAGACATATCTGAAATTAAGGAGGAGGAACTCCGAAGTACAACTGTCATCTCCCAACATGCTACTGGCTCACAGGCTGTAATTACAGAGGATACGCAAACACATGAATCAGTTTCACAGATTGAACAAATAGAAGTGGGCCCCTTAGTAACATCCATGGAAATCACAAATCATATTTCTCTCAAGGAATTGCCAGAAAAAAACAAAACACCATATGAATCCACAGAAGTGACCCTGGAACACACGACTGAAATGCCAACGGTAAGCGCCAGTCCTGAATTGGCAACCACAAGTCACTATGGATTCACCTTGAGAGAAGATGATAGAGAAGACAGAACACTGACAGTTAGATCTGATCAGAGCACTCGGGTCTTTAGCCAAATCCCCGAAGTCATCACAGTATCAAAAACATCAGAAGACACTACCTACTCACAGCTAGGGGACTTAGAGTCCATTTCAACATCAACAATAACCATGCTTGGCACAGATAGATCACTGATAGATAAAGAGAAAGAACCCAAAACTAATGGTAAGGTGACTGAAGATGAGTTTGGTCAATCACAGCCTACAACTACCTTCCCATCACAGCATCTTACAGAAGTAGAATTACTTCCATATTCTGGTGACACAACATCAGTAGAGGGAATATCCACAGTTATTTATCCATCATTACAAACAGATGTGACACAAGGAAGAGAGAGGACAGAAACACCAAGACCAGAGTTAAAAAAAGATCCGTACACAGTTGATGAAATACCAGAAAAGGTCACTAAAGATCCATTTATAGGTAAAACAGAAGAAGTCTTCTCTGGAATGCCTCTCTCTACATCTTCCTCAGAGTCCTCAGTGGAAAGGACAGAATCTGTTTCCCCTGCATTGACAATTGAGAAGTTAACTGTGAAGCCAACAGAAGCAAGAGATGTGGAAGAAATGACAACCCTGACTAGATTAGAAACAGATGTTACAAAGTCTGACAAAGATGTTACAAGAGTTCATTTGACCCACAGTACTTTAAATGTGGAAGTGGTCACAGTATCAAAATGGCCAGGGGATGAAGATAATTCAACTTCAAAGCCTTTACCCTCAACAGAACATGCAGGCTTTACAAAATTGCCTCCTGTCCCACTTAGTACTATAGGAATAAATGGAAAAGATAAAGAAATCCCAAGTTTCACAGATGGAGGAGGTGAATACACTCTTTTCCCAGATGGTACTCCAAAACCATTAGAAAAGGTTTCTGAAGAAGATTTAGCATCTGGAGAATTGACAGTCACCTTTCATACATCTACATCAATTGGCAGTGCAGAAAAGTCAGCTTCAGGAGAGCCTACAACTGGAGACAGGTTTCTGCCCACCACAAGCACAGAAGACCAGGTCATCAATGCAACTGCGGAAGGGAGTGCTTTGGGTGAAGATATAGAAGCCTCCAAGCCACTATTTACTGGCCCCCCATTTGTCCACACCTCCGATGTAGAAGAATTGGCATTTGTTAATTATAGTAGCACGCAGGAGCCCACTACTTATGTAGACATATCCCATACTAGTCCTCTTTCTATAATTCCCAAGACAGAATGGAGTGTGTTGGAAACTTCTGTTTCACTAGAAGATGAGATTCTAGGCAAATCTGATCAAGATATCCTTGAACAGACTCATCTAGAAGCAACCATGTCTCCTGGAGCTTTGAGGACAACAGGAGTTTCACAGGGAGAAACCCAGGAAGAACCACAAACTCCAGGGAGCCCATTTCCTACTTTCAGTTCTACTGCAGTTATGGCCAAGGAGACAACAGCATTTGAAGAGGGGGAGGGGTCAACATATACTCCCTCTGAAGGCAGATTGATGACAGGTTCTGAAAGAGTCCCAGGTTTAGAAACAACTCCAGTTGGCACATCTTATCCACCTGGTGCAATAACAGACCAGGAAGTGGAAATGGATACAATGGTAACACTGATGTCAACCATTAGGCCAACAGTGGTTTCAAGTACAGAGCCAGAAGTAATTTATGAAGCAGAAGGTAGTAGTCCAACAGAATTTGCATCAACTTTGAGGCCTTTCCAGACTCATGTCACACAGCTTATGGAAGAAACTACTGAGGAAGGAAAAAAGGCATCCTTAGATTATACAGATTTAGGCTCAGGGTTATTTGAACCCAGAGCCACCGAGCTCCCAAAATTTCCAACAACTCCAAGTGATATCAGTGTCTTTACTGCCATCGACAGCCTTCACAGAACGCCACCCTTGAGTCCGTCTTCATCATTCACTGAGGAACAACGTGTCTTTGAGGAAGAGTCCAGTGAGAAAACAACAGGTGACATACTTCCTGGAGAATCTGTAACACAGCACCCTGTGACAACTCTCATTGATATCGTAGCCATGAAAACAGAATCTGATATTGATCACATGACCTCAAAACCTCCTGTAACACAGCCAACAAGACCATCAGTTGTGGAAAGAAAAACAACCTCCAAAACTCAAGAGTTGTCTACTTCAACACCTGCAGCAGGGACCAAGTTCCACCCTGACATAAATGTTTATATTATTGAGGTCAGAGAAAACAAGACAG
Seq A exon
GTAAGTCTTTGCTTTCAAGGCAATCAGCATTTTCTCTTGAAAGTTAAAATGTCCATCATACCAAATGCTGCCATTAGATGATAAGAATAACTGGAGTGTCAAAAGTATGTTAGCTTCCTGCATCAGTACAAGAATTGGAAGGATATGTTAAACAGTTTGCAAGAGTATTAGGTACAATTTTATTTTGAAAGTTGCAAGAAGCCCTGCTTTGTCATCTAATACAACCACTTCATCATTGTTACATCCCTTCAGAGCGTGTAGAACAAAATGTTTTAATTTCCGTGTCTTCCATACATTACTACTCACGTGTAGCACTAGATGGTGCTAACATTCCATTGGTCTGCAACCATTAACCTTCAGCACTCACAATGTAGACAGTTAAATGATTTTGCATATCCCTAGGGTTGACCGAACTATCTCTAAAGGTTTGTTTTTTTCTCTTCCAGGATTTTGCAGGCTTACACATAAGTTGTGGAATGGGTAATAGGTCTACTTTAATTCAAATTTAACAGTTATAAGATATTAACTTTGTGTGTTTGTGTGTGTGTGTGTGTTTGTGTGTGTGTTTTAATGTAGCTTTTGTTGTTTAGAACCAAGTACAATCTAGCTAAGCCCTAGGAGTTGCTTGGAATCATTAACAACTTTAGAAGGCGAATTTGTGGACACGACCTCGCCTTTCTAAAAGGCAGGCCATGATGTTTTTATTGTGATTTCATTGTCTCCTCTAAAAGCTTTTTATTTTAATTGCCTAATACTTTTAGTTATCATTATCAAACATGTCTTGTTCTTTCTGAAAACCAACAGTGCACCATCATGCTAAACGCAAAACGCCGAGTTGAGAATGCATAGCACATACATACATGATGGGCTGTTTCACATTTCTTTGTGTCTTTTAAATTTAGAGCTTAAGTCTACTGGTTTTATCAAATCATTTGGTTCAAATTTTAATATAAGAATTAAATGAATTAATGTCCATTTTTCTGTGCTTGGCTCTAAGAAGCCTTGTGGGAAGCATGCTTGCTTATCAGTTTCTTTCTTGGTATTGGAAACACGCTCTGCTGGGTGTCACTCAGAAGACAAATGCTCTTTCATCAGGGTTATCAGGAGTCCAGCTGTTAAAAAGTACCTGTACCTCCAATTCAATTGGTATCCAGTGTTGTACACAGAAACTTCATGGCTTTTATTTGCTCATTTTCCCCAAAATTTTCTTTCCCCCAAATCACACAACCCTGCATTTGTCTCCTCAGCATAGGTCTCCTCTTCTCAGCATAGATTTTTAGAGGCTAGGAATAAAACATGATTTTTTTTTCTTTTGCTACTGGTGCAGTATTTTGTAAATCATAAAAGGTTTCCTGTCTTCTACATTGCTTTGACATCTCTCTTGAAACTGTAATTGGAAATGGAAATGTTACCAAGAAGTAGAAGTTGGAATTGCTGTTAGTTAGCGATAAAAGAAACATAAAACTGTAACTGTGGGGTGAGGGGTGGGGAATACAGAGGAGAGGGGATTGGGATCAGCCTTTGATTTCTGAATCTGAGAAGTTCATACCAATTAAGTCTATGTCTTCAAAGTTTATCTTATTGTGTTGTTAGTGATGTACTACTGAGTTGTATCAAATAGTATGGAACTGGAAATATAAGGCACCTAACAACTCCTGTGGATGGTAAGATGTACATTCAGCTTAGGGTGTTTAAATTACAAAATGGAAAAGGCCTGACACTTGACCACATCTTTCCTCCTGACCAAGTGCCACCAAGTGATGCCACCAAGTGGCACCAAGTGATGGCAACCATCAGGTGAAAAGCAGAACCAGCGTGTTTATAAACAGGAGTTCAAATGGAGGGTCTGCAAAGTCTGAGGCTGTAATAGTTTATGCAGAGGCGTGTCTTTATAGGTACATTGTGGTCTTCATGCAGCTGAACCTGCAGAGTTGGCTTCTTTCCCCCACTTCTAGAACATATGACCATTCTGAGAAAACCGTGAACTATCTGGCCATTTCCATCAGGCATGTTTGCAGTATGTACATGTTGGTAGGGGCACGGAACACAGGCGCAGTCTCTCTTTCATCTGTTTTTTTTTGTGTTTTAGATACAGATTCTTCTTAAAATATGACAGCATTGTTTGTTATTTTCAGAGGTCGACAAGATTTACTCAGACCCCACTACTCATTTAGCAGATGTTGCTAGTTTTCTAACAATAACCTAATTTTGTGAACTAGTATATTGAACTTTACCCATGAAAACATTAACACAGATGTTCATTTAAGTTCTAAGGCAGGTGTGTTAATGAGGAACCATGGAAAGTGAAACTTTTTATATTTCCATACTGGAAAAATCCTTGGTGCATGCATACTGTTGTATAAACCTATTCACCCAAATCAAATTTACCTTCACATTTACTCTGCACCCAAGTGAGTGAAAATGCCACCCAGGCTACATCAAACCACAGCATTTATAATTTCTGCTGCACTCAGAGAGTGATATAAAGCTTGACTTTTATGAAATACCATGAAACAAAACATGCTACTCAAGGCATGCTTACATCATCCACTCAGATGCACGTTAATGGCAACACTGGTTCTGCTGCTGGTGGGTAACTGTAGTTAACAGTTTAAAATTCTGAAGGAACTTCTCAGCCCATAAAGGTTTTATGAGCTGAAAAATGCTGTGGGGTGTGGTTAACAGTGGTTCAGGGATGCTGAAACCTTGACTCGTCTATTGCAGGAGTAGTTTGCACACCTGCACTTGGGGAAATTATTAGAAGGCTTTCTTTGTGAACATGTCTGAAGTCTGTAGAATTTGACTAAGACAGAGCCTTTGTCAGGTTAATATGTACTATGCCAGCTTTGAGTGGAAAGAAATTGCCTGCTTTATTCTTTCTTTACTGAAACTGTAGTCAATGGTTAGATTTTTGGCAAGTATTTTGTTTGTCACAAGTCTTACTATGATGGAAAGAAAATGGAATTAAATATCTGTGACTTAGGTGATCTGTCAAAGAACTAGGGATAATTAACATTGAATCCAAAGTAGTATTGATAACTGGGCACTATATTTTTAGTCTCTTAGAATTGCATACTTGAGCTATCTGCTATACCTTTGTTAAGTTTTGTCTGCAAATCCGGAAACTAAAAGTGATCCATTAATGACATAAGAATTTTTTTCTTTGTATTGATTGAGTAAATTCCTTCAATTAATTTGTATTTGAAGAAAAAAATACAATTTTTATTGCCTTCATAGAAGCATACATATTTTTTACAGTCAGTGAATGATTAAAAAATATTGAGACCATGGCTGCACATTCATGATGTATCACCAGTATCTAGATTTACATGACCACAAAATTCTCTACTATTTGAGATTTTTTTTTGTATGATTCATGTGCCCCTGTCTTTGTGCTATAGTTACCACCAAACACTCACTATTTCTTTAGTTAGAGATATAAATCTTTCAAAGATACTTCAGCACAGTGACAACCTTTTGATTCTTAATACTAAATCAGTAGGAAGATATTGCAACTCTCAAAGGGGAGACTAAATGGGTAGAATATTCAGTGTTTACAGGATATTATCCTATACTTGCAAGATCACTTTAATGCTGGAAAACAGACCTGAGAAACGTGAGATGAGAGAGTAAAGATCTGTGATGGCAGAAGCCTGTAATGGGCACTTTGGAAGCTGAGTCAGGAGGATGGCAAAAACAAGTACATGCATAATAACAAATTATTTAATGTGAGTCCTAGGCCCCAGATGTAAAAACACAGCCATTTTCTCTGTGAGAGTGGCATCTGTCTATCTAGCATTTATCTATCTGAACTGAGACTTCATAAATAGAAGGGCGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGAAATTAAGATGCTATCATTTTGAAGCATGCTGAACCAGGAATGAGGTATTGAACTAGGATTCTAGAATTGCAGCCCCATCATGTACAGTACAGAGATGTCAGCAGAGAAAGGAAGGAGCGGAGTGATTGTGGGCCAGTAGGTAGGGCTGTTTGAACAACCCATTAAAGGAGTCTATTTGAAGAGAAGCAAGGTTAACGTTTGACAAAGGAATGGCAAAATAGAGTTGTTTCTACTCTGTAGCTTAGTGGATATAATTTTAGAAGAAGTTATAAACTTACTTATTAGAGTCCTTCACTATATTGTAATCAAAGACTTCCTTACTTTTAAGTTATCAATTTTAAAATATCTGATAATATCTGTCTGTTTATCTGTATCTATATCTATGTGTATGTATGTACATCAAAGGACTCAAGTGCTAGAGAACTAAAGCAAAATGGATAGCAATGTTCAACTTTATGGTTAGCCTTTATTTGGTCAATTCAAAAAGTTATATGTATGAGTGCTTTGCCTGAATGTATGTCTGTGCTCCACTTGCATGCCTGGTACCTACAGAGGCCAGAGAGAGTGTTGAATCCCCTGCAACTGGAGTTATAGTCAGTAGTCAGTTTTGGAACTGCTGTGTAGGTCCTAGGACTCTAACCCCGATCCTACGGAAGAACAGCCAGAATTTTAATCTACTGAATGATCTCTCCAGCCCATATTTGCTGTATTATTTTTTAGAAATAAATTTTTAGAGAATTCCACAGAATGTATTTGGATTATACTTGCCCTAACTCTGCTCAGATCCACTTTGGATACCCAACCCACCCAATTGCATGCCATCTTTTTACTTTTTAAATTCATGTATTTGTGCTGCTCCAATGTCCTTTGAGTTTAGAGCTGTCTTTCGGATCATGGTCAGCCTAGCAGGAAGATTAGTTCAGGAAGCATTTTGAAGTCCAATTGCCCAAATTGCTTGTTTTGAGTGTAGTTCTTTCTTACTACTTAGGCACTCATCAAGTATCTGTAATTGCTTGAATATGCTGTGTAGGAAATCAGGTGCTCTGTTAAAAGGGAGTAGAATCTTTTGTGAAGAAGAGTTTATACTTGGTGATGTCTCCTTAACTCGGGCAAGATGACTGCATCTAACAATAGCCTTTGCACTTGAGGGAACTATGTTATCCGAGAATAACTGGGAGCTAAGAAAACCCATGCCTATTTACTATAACCTACCCACCTCTTCAATGTGAGGTCAGCAGAAGCAGCCTCCTTACTTACATATGTGTATGAGCCATTCTGGATGTGAAGTTTGTGAACTGAGAAAAAAGGTGTGCGTTGCTGAGCATACAAAGGCAGTCAGGGGGACACAACTTGCTTGAGAGCTGCTCCAGGTAAGCTATGGTTAGCCAAGTCAGAAGGAGGCAACAAGGATCACAGAACACAGTGATCTCTAGTTCTTTGATCTTGTTCACTTCTCTGGTGTTTGGGAAGGCTGTTTTGTAGATATAAGCATCGCATACTACACAAGAACTGAGGGAACGAAGGATCAAAAGCATCTGGCAACATTTTGGAAGGCATTTGTATCCTGATTTGTCATGTTGTTGTTGTTTAAAAAACTAAGCTGGGGCAAACTATGTCACAAATTTTAAAAAATACAGAGGATTCAGAATATTTTAAGCAATTTGATTAAAAAATCACATGTGTTTCTTTCCCCCCTTAAAGTACTACTTAGTCAATTTATTTCAATTAAGAATTGAGGATCTAACAGGATTCTGTCCTGCTTAAGTCTCTATCCTAACATATAAGCAGTGATATTGAAATATAAGACAATTAAATTCTTTTCTACAGACACACACACACACACACACACAGAATTGAGGATCTACATATACATGAAATCTTGACATTATGAGTATGTTCAGGCTTCTTCACTTTAAGATTTACAATTACCTACCAGGGATCTGCAGTGTGGCTATTTCATTTTCGCAATAAGGCTCTTGATAGATTTTCTATATATATATATTAGAAAAATTACATTTTAAAGAAAACATAGTCTTATTTGTCTTCACTGAGTAGGCTGCAATATCTTTCACTTAATTAAAGACTCTTAAGCTTAAATTATAAATATAAATATGTACTGTGACCAGTCGCTAGGCATGATAGCAACTATGTTTGTGTCTGGTTACAGAATGACTGCAAGACTTGTGCTATGTCTGCAAAATTCTGCTATGAAGTACTTAAAAATACTCTGTGAATAGTTGAAGGTCAGTTATCCATAAAGCCTGTGTGAAATGCCATTAAAAAAATCCATTAACCATGGTACTAGTATATTCAAGTCAAGCTGTTAAAATACACCCATATAAACATAGAAAAGATTGTGCATGCAGTCTACAGAGTTCTGTGGTTTGACTCTTGAGATCTAAATAAAAGTTATATTCTCCTTAGAGTAAAATTCTGAAATAAAGCACTCTTTTAAAAAAGCCCATTCTTTTATGAGCTTGGACTGTCAGTAACCCTGTTAAGTCTTTCTTGTTAGTGTGAAATAGAGCAGATCACTATTTTGCAATGAAACGGGACTTTGACAATAGTACAGGTGTCCCCCCCCACCATATGCCACAAAGAAACTTTTCTAGTTTGCCATAATTATAGCTGTTCAGAATCTTTCAGAACATGTGTGGTAAGTGGGGGTGGTGACAGGAAAGGGGGAGGCAGAGGCAATTTTGGAAAATGAATAAACAAAAACGGCTGAGTAGGATTTGATGATTTGTAAGGAATTATTGATGGTAATTCAGGCCATGTGGCCAAGAAGAATTCACCTACTTATGTGTACTGTAGATAGAGTTTTCTATAAACTCTGTCCTCATTCATGAAATGTTGAAAGTATGGAAAAAATTATATATATAGGGACAGAATAAAGTGTGAAAAAATATGAAAATTGAAAACCCTAGGTAGTTAACATTTTTCCATTCTCAAACCAAAGTTAAGAAATTCAAGGAAAGCATTTGTAAGTTGACACAACCTGAACAAATAGCCACTTGGGGATATTCCTTTCAGAAAAGGTAAATAACAGCTCTTACTCTCATTCTGCATTTTGTGTTTGCTCTAGTTAAGTCTTTTTTAGTAGGAAAATTCTAGGACTCCATATAACACAAAGATTGTGGTTTCATATTGTATTAGAACTTTTTGTCAAATAAATACATTTTAGATACTCTTGTCACATAGAAACACTACATGGCCTACTATATGTGTATTTGTTTTTGTATGCTAATCACCCTATTATCCATAAATATATACTAAACCTAACATATATCCACTGAGTCCAGCTGACAAGAAAAAAATTACAGTATTTATCAAGTGGTAACATTATGCATTAATGAAGCAAAACAAAATGAAACCCATGAGAATGTTAGTCATTTAAGCCAGGTTCATTTGGCCCTCTAGTTAAATTTTCATGAATGTGTGCAGATGTTATAATTTAACCTGGACTTATTTAACTATATTTAAATAGTACTGATGAGAAGCTGCTTGTTTTAGTGATAAAATTGTTGCTATTATATTCCAACAGTTTATATGCAAAGGCATTTTAATGTGGCCTTTCTATGCTTTGTACATTGTCTTTACATTCCTTTTTATAAGACAAAGTATACCTTTGTACAAACTATCTGAAATTTTAATTGTGTCTTCTTTTATAACTTACAAATGGTTACTATACGATAACAGTAACAGCTAATATTGGACAGACATCATTCATTTTAATGATGCTTCTATAAAAGTCTAGGTATTTAATCATTTTCTTAACTTACTGTTAAGGATTAGTTGCAACATTTATGCCAGAAGCAGCATGTAATTGTTTTGTGCTTTGATGTGTACTGGAATTAGGCATGTATCTAACTTCTCTTTGTGACTGAAATATTTTTTTAATCATTTAAGTATCCATATGCTTTAGCTTGGATGAATGAAATCCAAGTGAATACATTAGAATGGATGAAAGTGTGTGTAAAATGTGTCTAGTGTGAAGGTTAAATAGAAAGTTATAGTTAGGTTGAAAAAATAGACACCCAATATTTTAGTAAAATGATTCAGTGGGTATATCCTGGCATATAGACAGTATGTTTTTTTTTTTTTTTTTTTTTTTTAGTTATTAGGGTGAAAGAGAAGGTGGAATTACCGTATGTGTCTCCTGAAGTCATGTTTGTTGGCTTTCAACATAAAAAGTCAACACACATCCACAGAGTAGTTCAGTAAATATTACATTAATGTACAGTGGACTGGGAAAAAGCAAGATCATACAAACCGTCCTCAACTACTAATTTTCTCTGTTCTTATTGGATGTTGAATGTTGATGCCTTCCAATGAGGAAAGAAGCAGCTTATAAGAGGAACAATCTAGCAGAAAACATTTTTGGAGATGGGGTAATGGAGGCAGAGTTGTCTTTGTCATGCTAGTTTCTTCTGTGTGTTTATCAGACTCATCCTAAACTTGTGTGTCAGTTAGGGCTAAACAGAAAGCTTATTCTACAATAGCATTCCTCTGGGCAAGTTGTGAGGCCCAATGTAGCCTGTGTCTAGTCCATGACCTGGTATTTCCAAAAGCACTGTGGTGACAGTGGAAGTAGTGTAGCTGGACTCCATCAAGGATAGCCGAATGCATTCTGGAATGGGTGAAGCCTCAAGTTTTCTTTTTCTAGAACACTAGACTGAAAGTTTTGCTGGTGTATTTCTGGCAACAGAGAAGTAAACGGGGCATAGTGTTTGCTGCCATTTGGCATTACAACCCAGAGGATGGGTTTATATGTATTACTTGACATTTGTAATTAGAATACTTACATACAACATCAGGATTGTCATTCATTAAAATGTCAATAGCAAGAAATAAAGCTCAGCCTGGTCCTGGCACAGATCATAAAAGACAATGACATAAAGGAGAAAAAGGCTTCCTCTGGTCTTTTCAAGAAGATCTTTCCCAGCCCCCTCCACCACTGGATATATTTGGTCTAGGGAGTCATTTTTTGATGTCGAGAGATTCCTTCGTTATTGATTCAGTGAATACATGTGGCCATTACATCATAAATTGGGACAGAAACAAACTACTTTTCTAAGAATTGACCCTTAAGGCAGATAATAGAGGCCAGGAGGAATTTTATGTCTTTTCTTATTGATAGAATTCATATTTAATGTATGGAACAATAACCCATTTTTTAAAAATTTATGGTCTGGTGAAATGGTCTTGATTTCAACTTTTTTTGCAGCTCACAGCATCATCAATTGTGCATTCTATAACTAAAATGTCTATATAATTTCTTTTTCATTTGAGAACTCTGTTGTCATCTTAAGCACATTTAAGTGTTTTTCTAAATTGTTTCCACACTCACAAAATGGAATTTTTCTTCTTATTGTAATTACATAACAGCAAACTTGAAGAGCAAGAACCATTTGCAGAAAGGTGATTTCATGTAACTTGTAACAAGTCAAATCCTCTTTGTGTGTATGAGTGTGATCAGCCTTGTCTTCTGTACCCTGCCAAATCTTCCATTTAAGTATTGTGAAAACTCTTTGTTTTTTTCAG
Seq C2 exon
GTCGATTGAGTGATATGATTGTAAGTGGTCATCCAATAGATTCAGAATCTAAAGAAGAGGAACCTTGCAGTGAAGAAACAGATCCACTGCATGATCTGTTTGCTGAAATTTTACCCGAGTTACCAGACTCATTTGAAATAGACATATATCACAGTGAGGAAGATGAAGACGGAGAGGAGGACTGTGTAAATGCAACGGATGTAACAACTACTCCGTCAGTGCAGTATATCAATGGGAAGCAGCTCGTTACCACAGTGCCTAAGGACCCGGAAGCTGCAGAAGCTAGGCGTGGCCAGTACGAAAGTGTTGCACCTTCTCAGAATTTCCCAGATAGTTCTGCAACTGACACCCATCAGTTTATACTAGCAGAAACAGAATCGTCAACTACCATGCAATTTAAGAAATCTAAAGAAGGCACGGAATTGTTAGAAATCACATGGAAACCCGAGACCTACCCTGAAACACCAGACCATGTTTCAAGTGGTGAGCCTGATGTTTTCCCTACTCTCTCATCCCATGATGGTAAAACCACCAGATGGTCAGAGTCCATCACAGAGAGCAGTCCAAACCTTGAAAATCCAGTGCACAAACAACCTAAGCCTGTCCCTCTGTTTCCTGAAGAGTCTTCAGGAGAGGGTGCCATTGAACAAGCATCCCAGGAAACAATCTTATCTAGGGCTACAGAAGTAGCACTTGGTAAAGAGACAGACCAAAGTCCTACCTTATCTACCTCTAGCATACTTTCAAGTTCTGTGTCAGTAAATGTCTTGGAGGAAGAACCACTTACTCTAACAGGAATCTCACAGACTGATGAATCCATGTCTACTATAGAAAGCTGGGTAGAGATAACACCTAGCCAAACTGTAAAGTTCTCGGAGAGTTCTTCAGCTCCTATCATTGAAGGGTCTGGGGAAGTAGAAGAAAATAAAAATAAAATCTTTAACATGGTAACTGATTTACCACAGAGAGATCCTACAGATACACTCAGCCCTTTGGATATGAGCAAGATAATGATCACAAACCATCACATTTATATTCCTGCAACCACCGCTCCTTTGGATTCAAAACTACCTTCTCCAGATGCAAGGCCTACACAGTTTGGAATTCAAACAGCCACCTCTGAGTGGGTTTCCGATAAGTCTTTTGAAGGAAGAAAAAGAGAAGAAGATGAAGAGGGAGCTGTGAATGCAGCCCACCAAGGAGAAGTTCGAGCAGCAACAGAGAGGTCAGATCACTTACTTTTAACACCAGAATTAGAAAGTTCAAATGTAGATGCATCTAGTGATTTGGCTACCTGGGAAGGTTTTATTCTAGAGACAACACCCACAGAGTCTGAAAAGGAAATGGCAAATTCAACTCCTGTTTTTAGAGAAACAATTGGTGTAGCCAATGTGGAGGCACAGCCCTTTGAGCATAGCAGTAGTAGTCATCCCAGGGTTCAGGAAGAGCTGACCACTCTCTCAGGAAATCCCCCCTCTCTTTTTACGGACCTGGGCTCAGGAGATGCTAGTACTGGTATGGAACTCATCACTGCTTCTTTATTTACATTAGATTTAGAGTCTGAAACCAAAGTCAAAAAGGAATTACCCAGTACTCCGTCTCCCAGTGTGGAGATATCATCCTCTTTTGAGCCAACAGGATTAACCCCGAGTACTGTACTAGACATAGAAATTGCTGGAGTTATGAGCCAGACATCGCAGAAGACACTGATTTCTGAAATATCAGGAAAGCCAACTTCCCAGTCAGGAGTAAGGGATTTGTATACAGGCTTTCCAATGGGAGAAGATTTTAGTGGTGACTTCAGTGAATATCCAACAGTGTCTTATCCAACGATGAAAGAGGAAACAGTTGGGATGGGAGGTTCTGACGATGAACGAGTTAGGGATACACAGACTTCATCATCTATACCGACTACCTCAGACAACATCTACCCCGTGCCTGACTCAAAAGGACCTGACAGTACTGTGGCCAGCACCACAGCCTTCCCCTGGGAAGAGGTCATGTCCTCAGCTGAGGGGTCAGGTGAGCAATTAGCCTCAGTCAGGAGCTCTGTTGGTCCAGTGCTTCCACTAGCTGTGGACATTTTTTCTGGAACAGAGTCTCCATATTTTGATGAAGAGTTTGAAGAAGTGGCTGCAGTGACAGAAGCAAATGAAAGACCCACTGTTTTGCCAACAGCAGCAAGTGGAAATACTGTAGATCTTACAGAAAATGGGTACATAGAGGTAAATAGCACGATGTCACTGGACTTTCCCCAGACAATGGAGCCATCCAAATTGTGGTCTAAACCAGAAGTCAATCTTGATAAACAAGAGATTGGAAGAGAAACAGTGACAAAGGAAAAAGCTCAGGGACAAAAGACTTTTGAATCGCTCCACAGTTCTTTTGCACCAGAACAAACCATTTTGGAAACCCAATCACTTATTGAAACTGAATTCCAAACTTCCGATTACTCTATGTTAACAACACTGAAAACGTACATTACTAATAAGGAAGTGGAGGAGGAAGGTATGTCCATAGCGCATATGTCTACTCCAGGTCCAGGGATCAAAGACTTGGAATCATATACTACCCATCCCGAAGCTCCTGGAAAGTCACACTCTTTCTCAGCTACTGCTTTAGTGACTGAATCTGGAGCAGCTAGAAGTGTACTCATGGATTCCTCAACTCAAGAGGAAGAAAGCATAAAACTCTTCCAAAAGGGTGTGAAACTAACAAATAAAGAGTCAAATGCTGATCTCTCATTCTCTGGACTGGGATCAGGAGAGGCTTTGCCTCCTCTACCTACAACATCAGTGAATTTGACTGACATGAAGCAGATCATTAGCACATTGTATGCTGAGACATCTCACATGGAAAGCTTAGGAACAAGCATCTTAGGTGATAAAATGGAAGACCATGAAAGAATGGAAGATGTGTCCAATGAAGTTAGAATGCTCATTTCCAAAACAGGCAGCATCTCTCAAGACAGCACAGAGGCACTCGACACAACTTTGAGTCATACCGGAACAGAAGAACCTACAACTTCAACTCTTCCTTTCGTGAAGCTCATGGACTTGGAACGTTCTCCAAAGCAGACCCTCAGGTGGGAAGAGGAAACCCAGACCCATAGACCACAAACTATGAGTGGACTGATCTCTAATGAAAATTCTTCAGCATCAGAAGCTGAAGAAGCAGCAACTTCCCCCACTGCTTTTCTGCCTCAAACTTACAGTGTTGAAATGACCAAACACTTTGCTCCATCAGAGTCACAACCATCCGACTTGTTTAATGTAAACTCTGGAGAGGGATCTGGAGAAGTGGATACTCTTGACTTAGTGTACACTTCTGGAACTACTCAGGCAAGCAGTCAAGGAGACAGCATGCTTGCTTCTCATGGATTTCTGGAAAAACATCCAGAGGTGTCAAAGACTGAGGCTGGAGCTACTGATGTATCTCCAACAGCCTCAGCAATGTTCCTGCATCACTCAGAGTACAAGAGTTCTCTGTATCCAACCAGCACACTGCCAAGCACAGAGCCATATAAAAGTCCCTCAGAAGGTATTGAAGATGGTTTGCAAGACAATATCCAATTTGAAGGTTCTACCTTGAAACCTAGCAGAAGAAAAACCACTGAAAGCATTATTATAGATCTAGACAAAGAGGATAGTAAGGACCTAGGATTGACAATTACTGAGAGTGCTATTGTTGAAATTCTCCCTGAGCTGACATCAGATAAAAATATTATTATAGACATTGATCACACTAAACCTGTATATGAGTACATCCCTGGAATACAAACAGACCTAGATCCAGAGATAAAATTGGAATCACATGGCAGTAGTGAAGAAAGCCTTCAAGTTCAAGAGAAGTATGAGGGAGCTGTTACCCTTTCTCCAACTGAGGAATCATTTGAAGGCTCTGGTGATGCGCTTCTTGCTGGCTATACTCAAGCAATATACAATGAGTCTGTGACTCCCAACGATGGAAAGCAGGCAGAGGACATAAGCTTTAGTTTTGCCACTGGGATCCCAGTTTCTAGCACAGAGACAGAATTACACACTTTCTTCCCCACAGCGTCAACCCTGCACATTCCTAGTAAACTAACCACAGCTAGTCCGGAGATTGATAAACCCAACATTGAAGCAATATCTCTGGATGATATATTTGAATCAAGCACCTTGTCTGATGGCCAAGCTATTGCAGACCAGAGTGAAGTAATATCAACATTAGGGCATTTGGAAAAAACACAGGAAGAATATGAAGAAAAGAAATATGGAGGTCCTTCATTTCAGCCAGAATTCTTTTCAGGAGTGGGGGAAGTATTGACAGATCCCCCTGCTTATGTAAGTATTGGTAGTACATACCTTATAGCTCAGACTTTAACAGAATTACCCAATGTGGTAAGACCATCTGACTCCACACATTACACTGAAGCAACACCTGAAGTTTCCTCTCTGGCAGAGCTCTCTCCACAGATACCATCTTCTCCCTTCCCTGTCTACGTAGACAATGGAGTCTCTAAATTCCCAGAGGTTCCCCATACAAGTGCTCAGCCAGTTTCTACTGTCACCTCATCACAAAAGTCTATAGAGAGTCCTTTTAAGGAAGTCCATGCTAATATTGAAGAAACCATCAAGCCATTGGGTGGAAATGTCCACAGAACAGAGCCTCCATCCATGTCTCGTGACCCTGCTTTAGATGTTTCAGAAGATGAAAGTAAGCATAAGTTACTAGAAGAACTGGAAACGTCTCCCACCAAACCTGAGACTTCCCAAGACTTCCCAAACAAAGCAAAGGATCACATTCCAGGAGAAACAGTTGGGATGCTTGCTGGTATCAGAACAACAGAGAGCGAACCTGTCATTACTGCAGACGACATGGAGCTAGGAGGTGCCACACAGCAGCCACATTCTGCTTCTGCAGCTTTCAGAGTTGAGACAGGTATGGTACCTCAGCCCATCCAACAGGAGCCTGAGAGGCCAACCTTTCCTTCCTTGGAAATTAACCATGAAACACACACATCATTATTTGGAGAATCTATACTGGCAACATCTGAAAAACAAGTGTCTCAAAAAATTCTTGATAATAGTAACCAGGCAACAGTCAGTAGTACTCTGGATCTACATACTGCACATGCATTATCACCATTTTCCATTCTGGACAATTCTAATGAAACTGCTTTCCTGATTGGCATTAGTGAAGAGTCCGTGGAAGGCACAGCAGTTTACCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021614-Vcan:NM_001081249:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=NA C2=0.746
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: