MmuINT0176095 @ mm10
Intron Retention
Gene
ENSMUSG00000075284 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:MGI Symbol;Acc:MGI:2178801]
Coordinates
chr2:73436954-73440156:-
Coord C1 exon
chr2:73439977-73440156
Coord A exon
chr2:73437692-73439976
Coord C2 exon
chr2:73436954-73437691
Length
2285 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
TCCGCTTTCTTGTTCTTTAGATT
3' ss Score
10.74
Exon sequences
Seq C1 exon
AACCAAAGGGAGCCGGCGCCAGTGCTGGTGGCTATGGTGGAGGCGGCGGAGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGCAGCGGTGGAAATTTTGGAGGGGGTGGTCCTCCAGGACTGGGAGGACTATTCCAGGCTGGAATGCCGAAGCTGAGGTCCACCGCCAACAGGGATAATG
Seq A exon
GTAAATAGAGCTCTTTCTCTGATGTTCTAAACAGGGGCTCTGCCCTTTAAAACAGTTACACTGTTGAAGATGTCACCCTGTTTTATGAGGGATCAGGTGGGGCTTTTTATCAGTGAGGACCAGGCAGTCCTGCAGAGCTATGTAATATTTGGACAGTATCCTCGTGGTAACCCATCCTCCAGTGCTTTTCTAAAGGGTGAAGTGGATCTGGAAGGATGGGGAGTGGAAAAGAAGGAAGGGATCGGACCTGCCTCCCCCACCCCAGACTCTACTCAGTAACCTGGGGGTGCGGCTTCCTTTGTCAGACAACCCATATATAGCAACACACAGAAGGCATTTTCAAGTACACTGTGGAACATGTCCTAGAAGACACAGCTCCAGACCTCACTAAAAGAGCAACAGGTGTTTTGCATGGCAGACATTTGGTATTAGAAGCCAGTGTTCTGAATACAGATAATGCAGCCCTTATCTGAGATCCTTGAAGGTTGTATTTTCAGTCTCGGCTATTGCGCGACGGTGATGAGCTTTCCTGAGGATGGCATCCATGCCTAAACACAGAGTTCATGTAGGTTTCCAGTAGGCCTGTTATGCTCAGCTTGAAGGTAATCTCCCGTATTGGGATGAAAGTCTCACTCTTATCCAAAGGGGAAGTCACTGGTCCTCAGGTGGCTGGCTGTAGGTCCTAACTTGCCAGTCTTGTGTTCAAATATAAAATTATTCCCCTGAAACACACAAAAGGATGCCAGGCGGCTGACAGATGCATGCACTCGGTGCTTTTAACAAAGACGGAAAAATTAAACAAAAGGAAAATGAAGAAGGCTTTGAAGTCAGTGCTCGGGGCCTGTGCTGTTTTAAGGTGGATGGTAACTTCAGCTTCTATGTGAATTTGGAAGACATAGCGTAAGCCAGTGGGCAGGATTATACCACCTACTCCCTCTACCTGAAGTGTGCACTGCCTCGTCTTCCCAACGCTGGCTACTTGTTAGGCCTCCACTCACAACCTCTCCTCAGGGGCACCACTGTCTGCAGCTCCCCCACCAGGCCTGGCCCCTCTGAGCACTCTTGATCGGTCAGCTTCCTTTCTGTGCTAACAACTATTAGACAAGGCTTCTTCACTTGCATATCATTTGTTTCCCATAAGAACAGAAAAGACAGGAAAGAGAACTGTTTTTATTTTGCTCATCCAGCTGTTTCTAACATCTAGGAAAATGGGTGTGCGGTAAATATTTGTGTGTTACTTAATTCCTGGTTAAAGTGGAAGATGTTTCCATGGTAACCATTTTTTTCAAGAATGACCTTGTGGGACTGGAGAGGCAGCTCAGGTGTTGAGAGCAGCGGCTGCTCTCTCAGAGGACCTGGCCTTGAGTCCCAGCACCACATAGCAGCTGACAGTTCTCTGTAACTCTAACCCCAGAGGATCCAACACCCTCTTCTGGCCTGCAAGGGCACTGTAAAACATCTGGTGCATGAAGGCAAAACACCCATAATCATAAAATAAAAATAAATGAATGTTAAAAAAAAGAATTAACTTGGGTTTCCAATTTGGGGAGAGGCTGTTGAGAGCCCCTCCTCTCTCCCCCACTTAGTCCCTCCTTAAACCATAGTTTAGTGTGACCAAATTCCACTACACTTGTTTCAGCAAGTGTTACAGAGTTGTTACATCTTCCCAATACTGAGGGTTGGCCTAGTCCTGAGAAGACGCTTGCCTACTTTGCAATGAAGTTCTTACTCATACAAAGTTTTCCTTTCTAATTATTTTTAATGTAGTCATAATTCTTCACTAAATCCTTCCCACTCCACCCCACCCACATTTATTGAACTTTTTTTTTTTTTTCTCAAAGGGACTAGATAAACCCTCACACACAGAGAGAGACTTTCTTTGGAGTAACTCCATTCACACACCTAAGATGGCTGACTGAACATTTTTTTCCCCCAAATCTGAGCAGTGGGCTCAGGGAGATCCATGACAGCCATTAGCAGAAGCAGAAGGTTCTCCATGCTGCCCTGTTCTGTCTTCTAGTCACAGCGACATTTCCAGAACTATAGCAGGTGATGCGGTATTGCATGCTTTTGAAACTCTGGCTGTAAAACCAGTGCCTGATAAATAGAGCTATATCTCCGCCTCCAGGAGATGGACACCAACATATCAAACAATTTGTTTTATTATAAAGCTACTAGTTACTGGTAATCAGTGCTCAGTGGGAAAGGGCCAGCACGCACCCTTGCCCTCTGGGTTTTGGGGGGCTCCTCACTTTTCAATCCGTATCCGCTTTCTTGTTCTTTAG
Seq C2 exon
ATTCTGGAGGAAGCCGACCACCGATTTTGCCACCGGGAGGAAGAGCCACATCTGCCAAGCCCTTTTCACCCCCGAGTGGCCCGGGGAGGTTTCCCGCACCCTCCCCAGGCCACAGGAGTGGGCCCCCAGAGCCACCCAGGAACAGAATGCCTCCCCCGAGGCCTGACGTGGGCTCAAAACCAGATAGCCTTCCCCCTCCGGTACCAAATACGCCAAGACCTGTTCCGTCGAGTCTGCACAACCGGGGATCCCCAGCAGGGCTGGGAGCCCCCAGGCCCCCCTTTCCCGGGAACCGAGGTGCTGCTTTTGGAGCAGGCTCTGCGCGCCAGAACCCCTCCGGCTCCTCCTCTCCGTTTCCTAGGCCCCCTTTGCCCCCCACCCCAAGCCGAGCCTTGGATGACAAGCCCCCTCCACCACCTCCTCCCGTGGGCAACAGGCCCTCCATGCACAGAGAAGCGGTGCCCCCTCCCCCCTCACAGACCAGCAAACCTCCAGTGCCTTCCACCCCGCGGCCTGGGTTGGGTTCGCAGGCACCACCTCCTCCTCCACCGCCCAGCCGGCCAGGGCCCCCTCCTCTGCCTCCAGCTTCCAACGACGAGATCCCCAGGCTGCCACAGCGGAACCTGTCCCTCACGTCCTCTGCACCTCCATTGCCTTCACCTGGACGCTCAGGGCCTCTCCCTCCCCCACCCAGCGAGAGGCCCCCTCCTCCTGTAAGGGATCCACCAGGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075284:ENSMUST00000094681:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF071726=GRP=PD(63.2=78.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types