GgaINT0047293 @ galGal4
Intron Retention
Gene
ENSGALG00000009321 | WIPF1
Description
WAS/WASL-interacting protein family member 1 [Source:RefSeq peptide;Acc:NP_001012935]
Coordinates
chr7:16352534-16354697:+
Coord C1 exon
chr7:16352534-16352686
Coord A exon
chr7:16352687-16353929
Coord C2 exon
chr7:16353930-16354697
Length
1243 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TCTCTCTTCTTCCTGCACAGATA
3' ss Score
10.87
Exon sequences
Seq C1 exon
AACCCAAAGGAAGCAGCGGATGTGGCGGTGGCTTTGGAGGAGGTGGCGGTGGCAGCAGTGGTGGCGGCTTCAGTGGTGGTGGGCCACCTGGCCTTGGAGGCCTTTTTCAAGCAGGAATGCCAAAGCTCAGATCTGCTGCGAGTCGAGATGCTG
Seq A exon
GTAAGAAAGATCTTGCAATTTCAGTGCAAACAAGTAAATGACACATTGCTTATGTTGATTACACACCACAGCGATAAATTATCTGCTGGGATTGAGAATGCCTTCAGATATCTTAGGCTATCAAGAAATGACGTCTTCATCTTGAATCTTGTTTTATTTTTAATAATAGGCTTTATGAAGGGGAACTGAGACCCCTCTTTCCACTCCTCTCCTAATTATTGATGAAGGCTAAAGATCTTGGCAGTGTTGAGTGGCTGCTTGCAAAGTAGAGTGAGGTCCTGCTTTAGCTGTGGGTGTGCGGGACCAGAGGGGAGCACAAGAGGATTCTGGATTATTTCTCCCTTCTGTACCAGGAAAAAAGATCAACTTTCCATTTGGAAAGTACATCTGCGTCAGGTCCTCAAGAGTGTGATTTACCACTTAGGGAGTGCATGAGGCATCCCAGCTGGCTGCTGCGCGTGCTGCAGTTGGAGGGCACACGCTGTGTTCTTCTAGCTGTCCAAACAGCTGCCCAGAGCTCCGTGTCCCTTCAAACAAAGGAAATCTGGAACTCACAAGTTTCCTAAAGCTAAGGATGTAGCATTTCACACTTGCTGAAGGAGGACTGGACAACAGGGATCATAAAATATTATGAATCCTGCATATTTTATGGACTAACGTAATTTTTCAGCACATTTGTACAGAACAGTCTCTCGGAGCTGGTATTTTCTATTGTGTCATGGTCTATTTTGGGAACTTGTATTAATGCAAAAGTTCCCGGCACAACAGGACAGTGTTTCTTCAACTACAAGGCTGGCTGCCTTCTTGCTGACATACACAAGTACACAAGTAACTCACAGATATTAGAAAGGGCTGCAAAGCCCTTTGCTGGACAGCAGTTGTTAAGTTGTTAAATACCATTTCAGAGCTACGGCCCTTTTGCTTTTGAGTTGCTGGTATCAAATACTTGTTCTTCACCAGTTCTTCTCTTCCCTCCTGACATTATTGTTTGCTCCATGAGGGCTGTATACTCGTGTTGCCTTGCAGTCACTTGGGTCGCCCCCAGGCCATTCCTCATGAGCTGGGAGGACTTAACTGCTGTGATGGAGATCCCAAATAACACTGAGATTGCTGCTGACTGTTCCTGCGGAGCATCCCTGAGCACTTGGGCAGCTGTGTCCCAGCATACAGTGTTGCTATGTGAGGAAGGCCCTCTCTATGGATGCTGATGCCCTCTCCCTGTCTCTCTCTTCTTCCTGCACAG
Seq C2 exon
ATACTGGGGCAGCCCGCCCACCCGCACTGCCGCCTGGAGCCCGCTCTGCTGCTGCCAAGCCATTTTCAGCACCAAGTGGCCCACCTCGCTTCCCAGGGCCGCCACTGGGGCAGCGGAGCCCAGCTGCTGACCCTCAGAGGAGCCGCCTGCCACCACCCAGGCCCGATGTGGGTTCTAAGCCTGAGGCCACACCGCCACCGGTGCCTAGCACACCCCGGCCCATCGCCTCCAGTCTGCACGGCCGGGGTTCAGCACCAGCGCCAGTCCTCAACCGCCAGCCCAGCCTGGGGCCGACGCCACCGCCATTCCCAGGCAGCCGGGCCGCAGGGTCAGCTGGGTCCCTGCGGCAGCCTGGCCCGGGCCCAGCAACCCCATACTCGGGCAGACCACCGCTGCCACCCACACCCGGCCGCTCACCAGTGGATGAGAAACCACCGCCGCCACCACCTCCCTCTGGGCACCGGCCAACTGCCAGCCGGGACATGGCCCTGCCGCCGCCACCACCACAGAACAGCAAACCACCTGTGCCTGCTTCACCGCGGCCACCCCTCGGTGTCCCTGCACCCCCACCACCCCCCAGCAGGCCAGGGCCACCCCCTGTGCCCCCCGGTCCCGCCAGCAGTGACGAAATGCCACGACTGCCCCAGAGGAACCTGTCCTTGGTGCCCCCTGCTGCGCCTAGCTCTGGGAGTGGCCGCTCCGGCCCCCTGCCACCACCACCCAGTGAGAGGCCCCCGCCACCCATCAGGGATCCCCCCAGCCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321:ENSGALT00000038663:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGAGGCCTTTTTCAAGC
R:
GGCTGGCGGTTGAGGACT
Band lengths:
342-1585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]