RnoINT0165603 @ rn6
Intron Retention
Gene
ENSRNOG00000018406 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:RGD Symbol;Acc:620887]
Coordinates
chr3:60158090-60161846:-
Coord C1 exon
chr3:60161682-60161846
Coord A exon
chr3:60158825-60161681
Coord C2 exon
chr3:60158090-60158824
Length
2857 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
3' ss Seq
TCCATTTTCTTGTTCTTTAGATT
3' ss Score
9.99
Exon sequences
Seq C1 exon
AACCTAAGGGGGCTGGCGGTGGCTATGGTGGAGGCAGCGGAGGCGGAGGAGGAGGAGGCAGCAGCGGTGGCGGTGGAAATTTTGGAGGGGGTGGTCCTCCAGGACTGGGAGGACTGTTCCAGGCCGGCATGCCGAAGCTGAGGTCCACCGCCAACAGGGACAACG
Seq A exon
GTAAACAGAATTCTTTCTCTCTCTGAAGTTCTAAACAAGAGGCAATTTGGCTGTCAGGCTCTGCCCTTTAAAACGGTTACACCGTGCAAGATGTCACCCTCTTTTAAGAGGGATCAATCAGGTCGGGCTTCTTATCAGTCAGGACCATGCAGTCCTGTAGAGCTATATATTCTTGGATAGCATCCTTGGGGTAACCAATCCTCCAATGCTTTTCTAAAGAGTGAGCTGGAGTGGGAAGGGTGGGGAATGGAAAAGAGAAAGGTGGAAGTGGACCTAACTCACCCCTCCCCACAACTCTACCCAGTAACCTAGGAGTGCAGCCTTCCTTGTCAGACAACCCGGATAGAGCAACACACATAGGCGTCTTTAAGTGCACTGTGGAGCATGCTCTAGAAGACACAGCCCCAGAACTCACTAACCAGCAACAGGTGCTGTGCATGGCCGATAACTTAGAACTAGAAGCCAGCGTTCTGAGTACAGGTAGAGCGGCCTACAGGTAGAGCGGCCCTTATCTGAAGTCCCGGAATGAGGTATTTTCGGTCTCGGACATTGCGTGATCACGCTGAGATTGCCTGAGGACGGGACCCAGGCCTAACCAGAGTTCACAGAGGTTTCAGGTGGGCCTGTTGCACCCGGCTTGAAGGTAATTGTGTGCATTGGGATGAAAGTCTCGCGCTCGTCCGAGGGTGAAGTCTCTGGTCCTCAGGTGGCTGGCTGTAGGTCCTGTCTTGCCAGTCTTGTGTCCAGATACCAAAAATCATCTCCCTGAGGCACACGAGAGGGTGCTCAGCAGCTGCCAGAGGCATGCACTTGGTACAGGCATCTAATATGCACTCACACACAAAGGGGGGAAATTAAACAAAGGGAAAACGAAGACGGCTTTGAAGTCAGTGCTGGGGGCCTGTGCTGTTTTAAGATGGATGGTTAACTACGGCTTCCCCGTGAGTTTGGAAGATGAGGCATAAGCTAGTGCTGCAGGATTATACCGCCTACTCAAGGAAAACACGTTTACAGTGATAAAGTCAAAGTAAAGATTATCCCGGGTTCGTGTTACTCCACTGACCAAGTGCTTCTTGTGTGGACGATGGACTCTAACTCCTCGCCTGCAAGGCTCTCAGTGGCCTGGCCACTTGGGCTTCCTTTCCTGGGATTCATTTCTCCTGTGCTGTGGCACCCAGGCTTCTGGTTTGGAGCCTGAAGCTTCTGCCCAGGTCACTCACTGACCTCTCCGGAAGTGTGCACAGCCTCATCTTCCCAAAGCTGGCTACTTCTTGTTAGGCCTCAGCTCACGTGGCCCATCTCAGAGGCACTGTCTCCAGCACCCCACCAGGCCTGGCCTCTCTGAGCGCTCTTGATTCCTCAGCTTCCCTTTTGTGCCAATAACCATGAGAAAACACCTCCTTACTGGCTTATCGTTGTTGCCCATAAGAACAGAAAATGCAGGAGAGAGAACTTTTTTATTTTGCTCATCCAGCTGTTTCTAATATCTAGAAAAATGGGTGTACAATCTATATTTGTACATTACTTAATTCGTGGTTGAAGTGGAAGATGTTTCAATGGTAACCATTTTTTCCAAGAATGACATTGGGGGACTGGAGAGGCTGCTTTCTCAGAGGACCTGTGCTTGAGTCCCAGCCCCCTCATAGCAGCTGACAGCTCTCTGTAACTCCAACCCCAGATACTCCAACACCCTCTTCAGGCTGGCCAGGGCACTGTAAAACATGGGGTACATGAAGGCAAAATATCCATAATCATAAAATAAAGGAAAATGAATCTTTTTTTTTCTTTTTTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGGAGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCATGATTCTTTAAAAAAAAAAAAGAATTAATTTGGGTTTTGGATTTGGGGAGAGACTTTTGAGATTCCCCTTCTCTCTTCCGCTTAGTTCACCCATAGATTAGTTTGACAAAATTCTACTACACTTGCTCAACAAAAGTGTTACAGAATTGTTAAATCTTGCTAATACTGAGGGCTGACCTAGTCATGGGGGAGAAGCTTACCTACTTCTTTGCAAATGAAGTTCTTAGTCATACAATTTTTTTCCTTCCTAATTATTTTTAATGTAGTCATAATTCTTGACTAAATCCTTCTCACCCTGCCCATATTTATTGAGCATTTTTTCTCAAAGGAACTAAATAAACCTTCACAGAGAGAGAGAGAGACTTTAAAAAAAAAAAAGATGTATTTTATATATATGAGTACACAGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGGACTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTTATCTCTCCAGCCCAGAGAGAGACTTTCTGTGGAGTAACTACATTCACACACCTAAGATGGCTGACTGAATTTTTTTTTTCAAATCTGAGCAGTACAGGGCACAGGGGAATGGACAGCAGTGGAGGTCCATGACAGCCATTAGTAGAAATCTATCCAAGGCTCTCCATGCTGTCCGTTTGCCCTCTAGTCATAGCGACATCTCCATGCTGTCACACTCTCTCCTCTAGTCATCCAGTCATAGCGACCTCTCCAGAACCATTGCAGGTAATACATCCTCGGCTGTAAAATCTGTATCTGGTAAATAAATAGAGCTATGTCTCCGCCCACACCAACAAATTAAATAATTTAATTTATAAAGCTCCTAGTTAGTGCTCAGTGGGAAAGGTCCAGCACCCACCCTTGCCCTCTGGGTTATTTGGGGCTCCTCACTTTTCAACCCAGTATCCATTTTCTTGTTCTTTAG
Seq C2 exon
ATTCTGGGGGAAGCCGACCACCGATTTTGCCACCAGGAGGAAGAGCCACATCTGCCAAGCCCTTTTCACCCCCAAGTGGCCCGGGGAGGTTTCCCGCACCCTCACCAGGCCACAGGAGTGGGCCCCCAGAGCCGCCCAGGAACAGAATGCCTCCCCCGAGGCCTGATGTGGGCTCAAAACCAGATAGCCTTCCCCCTCCGGTACCAAATACGCCAAGACCCATTCCGTCGAGTCTGCACAACCGGGGATCCCCAGCAGGGCTGGGAGCCCCCAGACCCCCCTTTCCCGGAAACCGAGGTGCTGCTTTTGGAGCAGGCTCTGTGCGCCAGAACCTCTCGAGCTCCTCCTCTCCGTTCCCCAGGCCCCCTTTGCCCCCGACCCCAAGCCGGGCCTTGGATGACAAGCCCCCTCCACCACCTCCTCCCGTGGGCAACAGGCCCTCCATGCACAGAGAAGCGGTTCCCCCTCCCCCATCACAAAACAGCAAACCTCCAGTGCCTTCCACCCCGCGGCCGGGGGCGGGTTCACAGGCACCACCTCCGCCACCGCCCAGCCGGCCAGGACCCCCTCCACTGCCTCCGACTTCCAGCGACGAGATCCCCAGGCTGCCACAGCGGAACCTGTCCCTCACCTCCCCTACACCTCCCTTGCCTTCACCTGGACGCTCGGGGCCTCTCCCTCCCCCACCCACCGAGAGGCCCCCTCCTCCCGTGAGGGATCCGCCAGGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018406:ENSRNOT00000024922:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF071726=GRP=FE(53.9=100)
A:
NA
C2:
PF071726=GRP=PD(2.9=1.2)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]