DreINT0175768 @ danRer10
Intron Retention
Gene
ENSDARG00000071084 | wipf1b
Description
WAS/WASL interacting protein family, member 1b [Source:ZFIN;Acc:ZDB-GENE-110815-1]
Coordinates
chr6:10552341-10554697:-
Coord C1 exon
chr6:10554545-10554697
Coord A exon
chr6:10553091-10554544
Coord C2 exon
chr6:10552341-10553090
Length
1454 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TAGTTTGCTCTCTCTTTCAGACT
3' ss Score
9.68
Exon sequences
Seq C1 exon
AACCCAAAGGTGGAGGAGGGCCTGGAGGGGGAGGCGGGGGCGGAGGAGGAGGAGGAGGGTTTGGTGGTGGTGGTGGTGGGGGTGGAGGAGGCGGAGGAGGTCTGGGTGGGCTCTTCCAGGGTGGCATGCCAAAGCTGCGCTCCACTCGAGATG
Seq A exon
GTAAGAACAAACACACACACACACACGCGTTTGTTAAACGTACTACTGTGTTTACTAATTCATTTCTTCAGCAGGGATTGATTATAGACATTTTGCACTTTTTACACCCCTTTTTACACCCTTGCACATTTTTGCGACCCCTTGCACTGCAAAAACTCTCTATCTAGTCAAAAGTTTAAATTTTATTTCTAAAGGCAAAAAAATCTTGTTGATCTTGTGTTAAGAATAAAAAATTAATCTTTTTTTTTACTTTAATAAAGCTTAAATTTATGTATTCTGCCTACAAATTTAGTTCAATTACAATGAGATATAGCTATTTACGACCAGCTATGTATTTTTAAGACTTAATTTCAGCTGTAATAACTTGTTTTAAGTTTGCCTATTAAAAAGGCTCAAGAATCGCACTTATTCGTATTTTATCTGTCGTAGCTATTTTTAAAATTGTCTATTTATTCATTAATGTTTGTGTGGTCTTGATTTAATTCATACAATAATCTTGTTTAAAGCTTTGTTTTAAGACAGAAAGAGGAATCCTCCTGTTTATTAATTCTAGTTTTAAGAGATCATCACACAAAATCAGAAAAGCATACAGTTTGAAAAGCTAGTTTTAAGATAATTCAACTAAATTCATTGCCTTATTTTAACAATGTTTTCTTTATTAAAGTCTAGATGAGTTTTCTTGGGTTTCCCAGCATAAAACATATGCCAAAGTTGTTGATGGTTCATTCCGCTGTGGTGACCCCTGATAAATCAGGGACTAAAGGCTGATTTATACTTCTGCGTCAAGCGCACGCACATGGTCCAGCGCAGCCTTCACACGGCCTCATAGCTTTTGCTGTGGCTGATGTGGACACATACCTCTTAAAAAATGTAACGATGCGTAGTGCAAGCTCTATGATTGGTCAGCTTGGTAGCTGTGATGAGTGTGGGCGGTGCTGAGAACCGTGAGCCAGATGGAGCAAGTGTTTACAAGTGTCGAGACCATTAATGACGCTCCAGATGGAAACTTTTGTTTTGTGTTTACCTTGTGATTAAAGTTATTGCACGTCTGCAGGTTCTTGCCTCTGAATAAGTGAGTTTTAGCTACTCGTACATTAAGGTAGTGCTCAGAAAAAACAAAACACCCAAGAAGAAAGTTGACACAGAGGAACATAAAAACCCGCTGCCAGCTAGTGCTTCGGAAGTGTTATTGCAGAGTATGAGTATAAATGCACGGCCATGCCCAAGGCAAGCACCGTGGGTCACGCCGATCACTTGATGCAGAAGTATAAACCAGCCTTAAGCCGAATGAATGAAATTAATGTTATAATCTTCCTGCACTGGCAGATAATTTCACTTGTTCCTAGTCTGTATCATTTATTATTTCACTTATTGCTCATATTTAAATGATTAATTTTTTGCATTGTGCACCAATTAGATTATCTGGTTATGAAATAGTTTGCTCTCTCTTTCAG
Seq C2 exon
ACTCTGTGAGTGTCAGGCCTCCGGTTCTGCCACCTGTAGCTCGTACCACAGGTCCGCGGCCTTTTGGTGGAGGATCTGGCTCTGCCCCTCGTCTGCCTGTGCAGCGCAGTGAATCTTTTGATCCTCCACGGGCACGAATGACTCCACCACGTCCCGAAACGCCAGGAGGGCCTCCTCCTCCTCTTCCAAGTGCCCCCCGACCCTTCCAGAGCAGTACACAGAGCAGGGGGCCACCCGCACTACCAGGCACTCCCCGCTTTGGCTCTGCACCAACCCCTCCACCCCCAACCCTTCCTGGGCGTCAGCCTGCACCTCCACCAGTGCCAGGTGGGATAGGTCGTCCTCCATCAGTTCCTTCTCCTTCGACTGGTCATGCCGGAAGGCCTCCACCTCCTCCTGCACCTGGTCGGGGTGAAGACCGCCCTCCTCCTGTTCCCCCTGCAAACCGCTCAATGCCACTGACGCGGGACAGCCCTCCCCCTCCACCTCCTCCATCAGCAAGCAGTAAACCGACTCCCCCTCCAGCTCCTTCTCCTGCCTGCTTGAGGCCACCGGTGAGTGCAGCCCCTCCACTGCCGCCAGGTCGCCCAAGCCCAAATACTCCAGATGAACATACGCCACGACTTCCTGAACGAAACCTGTCACTAGCCTCACATCCGCCCGCACCTCCGCCAGGGCGATCCGGACCCCTTCCTCCACCTCCCTCCGAGAGACCGCCTGCGCTGGGCAGAAATGCAAGTGGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071084:ENSDART00000151661:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGGAGGAGGGTTTG
R:
GCCCCCTGCTCTGTGTACT
Band lengths:
342-1796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]