HsaINT0182990 @ hg19
Intron Retention
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:12736]
Coordinates
chr2:175436404-175440108:-
Coord C1 exon
chr2:175439932-175440108
Coord A exon
chr2:175437175-175439931
Coord C2 exon
chr2:175436404-175437174
Length
2757 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TTTGTTTTCCTGTTCTTCAGATT
3' ss Score
10.29
Exon sequences
Seq C1 exon
AACCTAAAGGAGCTGGTGCTGGAGGCGGTGGTGGTGGCTTTGGTGGAGGCGGCGGATTTGGCGGAGGAGGTGGTGGCGGAGGCGGTGGAAGTTTTGGAGGGGGCGGACCTCCAGGTCTGGGAGGATTGTTCCAGGCTGGAATGCCGAAGCTGAGATCCACGGCCAACAGGGATAATG
Seq A exon
GTAAGGAGAGTTTCCCTGTCTCTGAGTGACTGAAGACAAGGCAGAGTTTGGCAGTTTGGAGGCTGGTCATAGCCTCTAAGGCTCTTCGCCCTTATTAAAATATTGTACATTGTTTTAAATATTACCACTGTTTTATAAGAGACTCAATTTAGGCTTTATTATTATTATTAACCAGGATCAGACAGCTACACAGAACTATGAAATTTTCACCCAGTGTCTTTGGGGGTAACCTGTACATTTTTTTTTTTTTACTTTTCTAAAGGGTTAGCTGGAGTGGGAAGAAAAGGGAGGAGCAAATAGAACTTGCTGGCCCTGGAAATCTGCCTGGTGACCTGACAGATTCAGCTTTCTTTGTGAGGTAGCCCAGCTGTCTAGTAGAGTAAATACTTGTGAGCCGCTTTTCAAACACGATGGAGCACATCTTGTGGAATATGATTACAAATCTCACTAAATCTGAAAAAGTGTTTTGCATGACAGATATTTGGTATTTCAGTGCCAGTGGTTCTCAGGAGTCTCTGCAGGGAGCCATGGACATGAGTCCTTCAGGATTGTCTATGAACCTGATGGTAGAAAAAAACTGAACTTGCTCATGAATGCCTAGATAAAAAACTTTGCAGAGGGCATGAGGCTCTCTCCCAGCTACTACAGAAACTCAAGAAATTTTACCATAAAACTGCTTTTGTAATGTTGATCATGTTATAATAATTTTCATTTTTAGACCTTTTATAAGATGTCCCCTGGGAAAGAATGAAACTCTCACATTTACATGAATATGGAATCACTGAATCCTCAGGGTTAGCCTACTATTTTATCACTGAATGGTCCAAATCTAGAGAGAAACTCAGTCACATGAGAGGTTCTATCTTGCCAGACCACCATTTAAATTTGAATTTAAATTTATTTAAAACTCACCAAAAGGATTTAAGGCAGCTGATAAATGTATACATTTAGTACTTTAACAACAGGTGAAGAAATTAAGGCAAAAGACAAAGAAAAATAAAATAATAAAATGGGCCAGGCATGGTGGCTCACACCTATAATTCCAGCACTTTCACAGGTCAAGGCAGGCAGATGGCTGAAGCCCAAAAATTCAAGAACAGCCTGGGCAACATGGCAAAATCCTGTCTCTACTAAAAAAAAACAAAAAGTTAGTGGGCATGGTGGCTCTTGCCTGTAGTCGCAGCTACCCAGGAGGCGGAGGTGGGAGGATTGCCTGAGCCCAGGAAGTTGAAGCTGCAATGAGCCGTGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGGAGGCACTGTCTCAAAAAAAAAAAAAAAAAGAAGAAGAAAGTTCTCTCTTAAGTTCATGATACTCCACTGTATACATCTGTCCAAATGCTTCTTCCTGTGCCTTAGATAAAATCGGAACCCCTTCTGTCCTGCAGGGCTCCTTGTGACTAACCCCTGCTGGCCACTCAGGCTCCACTTCCCATGGATCTCTCCCATTCTCACTGTGCCCCGGGCACATGGGCCCGTTTTTGAACTTGAAGCTCTTTCCCACCTCAGGGCCTCTGCACCTGCTGGCCAACCCTGCCCAAAGTGCTGGTCTTCCTCATCTTTCCGTGGCTGACTCCTTCTTGTCAGGCCTCAGCTCACATGTCACATTCTCAGAAGAGCTGTCCCCAGCCACTCCATGTACCCTGGCCTCTCCAAGCACTCTTGATCTCATCGGCCTATTTTAGTGTCTTTTTAGTACATATAATTATCTGAAAGTATTTATTTCCTGGTTTATTGTTTATCTCCCCCCACAAGAATGTAAACTACAGGAATGCAGAATCTTTTCTATTCTGTTTACTCCTCTGTCTCTAGTCTCTAGATTAATGGCAGGCGCATAGCAAGTGCTCAAAATTATTTGGTACACTTATTAACTCATAAATGGGTAGATTTTTTTTTTTTTTTTCAGAATTACCTTGAGTTCCAAGAGATTCTGGGATGGTGGTTTGAAATTTTCCATCTCTTTGGTTCCCCCTTTAGTTTCTCCCTTGTTGAACCAGAGCAGTTATGGGATTATTCTGTCCTGCCAATACTGAAGCAGAGGTTGACGTGGTACCAAAAAAAAGTTGTGTAGTTGCCTGCTTCTTTGTAGATGAATTCCATCCACTGGTGTCAACTCTTACAATTAAACTTTACTGATGGTTCTTTTTCCTTTCTTAGTTTTTTCTTATTGCAGTCATAACTCTTTTCTTATAATTTCCCCTTACAGTTTTCCACTTTTTTTGGGGCATTTCTCTTCATAGGGACTAGATAAGCCCTCACATTTGGAGATTTACATTGGGATAATTAATTTTTTCACCTAAGACAGCTGACTTAGTTTCAAAACTGAGAGGTACAAGGGCTGGGAGACAGAGATGGTGATGAGGAAAAATGAAAATCATGATTCTACCAATGCCATCTTGTTCTTGTCCTCTCATAATGAATAGGCATCTCACCAGAACTCTCGCCCACTTCATCCTGGCTCTTGCCTATACATAATGCTAAGAGATATTTGCAGAATCCTTTTGAAAGCTCATAGGCTGTAGAAGTTGGGACTCGCAGGTAAATAGAGCTATGGTCGATTTTCTGCTCCCAAGAAGGACCAACAAAACCCAATTTATATAAATAATAGTTTCCTGTATTTTATAGCCCTCTGAGGAAGGGACTTCCAGTCACTGGGAACAGACTCTAGCTCTCTGATTTCTTCAGGGTTCCTGATTTCCTAACTGATGTTTGTTTTCCTGTTCTTCAG
Seq C2 exon
ATTCTGGAGGAAGCCGACCACCATTGTTGCCACCGGGAGGAAGATCCACATCTGCGAAACCCTTTTCACCCCCAAGTGGCCCAGGGAGGTTTCCTGTGCCTTCTCCAGGCCACAGAAGTGGTCCCCCAGAGCCTCAGAGGAACCGAATGCCGCCCCCAAGGCCCGACGTGGGCTCAAAGCCTGATAGCATTCCTCCTCCAGTACCTAGTACTCCAAGACCCATTCAATCAAGTCCGCACAACCGGGGGTCCCCACCAGTGCCCGGAGGCCCCAGGCAGCCCAGCCCCGGGCCCACTCCTCCCCCTTTCCCTGGAAACCGCGGCACTGCTTTGGGAGGAGGCTCAATACGTCAGTCCCCCTTGAGCTCCTCCTCGCCCTTCTCCAACCGGCCTCCCCTGCCGCCTACCCCCAGCAGGGCCTTGGATGACAAACCCCCTCCACCACCTCCTCCAGTGGGCAACAGGCCCTCCATCCACAGGGAAGCGGTTCCCCCTCCTCCTCCTCAGAACAACAAGCCTCCAGTGCCTTCCACTCCGCGGCCTTCGGCCTCCTCACAGGCCCCACCTCCGCCGCCACCTCCCAGCAGGCCCGGGCCGCCTCCTCTGCCTCCAAGTTCCAGCGGCAATGACGAAACCCCAAGACTCCCACAGCGGAATCTGTCCCTCAGTTCGTCCACGCCCCCGTTACCTTCGCCAGGACGTTCAGGTCCTCTTCCTCCCCCGCCCAGTGAGAGACCCCCACCTCCAGTGAGGGACCCGCCAGGCCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935-WIPF1:NM_003387:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.998
Domain overlap (PFAM):
C1:
PF062736=eIF-4B=FE(40.6=100),PF071726=GRP=FE(56.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)