MmuINT0178653 @ mm9
Intron Retention
Gene
ENSMUSG00000036898 | Zfp157
Description
zinc finger protein 157 [Source:MGI Symbol;Acc:MGI:1919404]
Coordinates
chr5:138888743-138896317:+
Coord C1 exon
chr5:138888743-138888835
Coord A exon
chr5:138888836-138896207
Coord C2 exon
chr5:138896208-138896317
Length
7372 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTTTATTATATTGTTGTAGGTG
3' ss Score
9.66
Exon sequences
Seq C1 exon
GGCACTGCGTGACTAAACCTGAGTTGATCTTAAGGTTGGAGCATGGATTCCAGCCATGGAGCATAGGAGACACTTCAGTCTGGCGTCTCCCAG
Seq A exon
GTCAGTGACTGTGAACAGGGGAGGGGAAGTCAACAAGGACGAATGCTCATAGGATATTGGTCATCTTGAGCTTGAACCGCCTTCACCATTTATTTTATTCAGTTTCCAAATGAGGAACTCTGTGTCAGTTTGTGTCCTTTGTTGTTGTTGAAGTCTGTTTTCCTAAAATTACTTTTGAAAAATATTGATCTTTGTATAGGTTCTCTCAGACATTTTTGTTGTTGCTTTGAGACCAGGTCTACTATAACCCGGACTGCCCTCAAGCTTGCCCACTATCAGGAGATGTCGCCGTACCCAGTCTTATTTCTATTTGTTAGTTAGATACGTTGCTTAAATATTTTATCTGAATTCTTAATTGTCCTTTCTACCTTGTTTAATAATGAAGATTTCTTCAGTGCTTGGTCTTGATCTGAGAGTTTGATAGCATTAATTAACACTCAGTTGCATGTATTCTTGAAGGGCTTACATTCAGTGAGAGAAAAGGGAAACGATCACATAATGTACTGGAGCAAGATGAGAAACACCAAGAGTATTTACCCAGAGAAAGGCAAAAAATAAAAATAAAAATAAAAAAAATTAAAATAAAAAAAAAACGGATGGAGTTTTATTTTAAGAAAGGCGTAAAGACACTGTTGAGGAAATACTCATTTATTTTAGTTTAGTGTTATGATTACTCTTTTTTAAAAACTGAACTAGCTATGTGGTGGTAGTGGTGGTGGTGGGACAGTCCTTTGATCCCAGTACTCAGGAAAGAGAGGCAGTGGAGGCAGGCAGGTCTCTGAGTTCAAGGCAAGCCTAGTTACAGAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTGTTGAAAGACAGACAGACAGACAGACAGACAGACAGAGACAGGGTAGAGGCAGGGAGGATGTGTGGGGATGAGGGAGAGGATGGGGAAGGAGAGAGGGAGAAAGGATTGTTGAACTAAATATATATGTGGATGTCTATTAAAGGTGTGACAATGAAGTTAGAATGGTAAAGACATTTGGAATTGGTGGCCTAAAAACAATCAACTGCTTTTTTTTTTTTTTTTAAATTAGGAAAGAAAGCTTTGGAAGTTTAAGGATGGGATTGCTGATAAGTTTTTTCTATGCTAGTGCATGAATACCCAATGTCATAGTCACAAATGAGAGAATGTTTCCCAAGGAGACCAAGAAAGAAAGAACATTTGGCATCAAGAAAGGGGCGGCAGGGACAGTATGCCCTAAAACAGAAAAGCTATTGGGAAAAGTGTACCCACATCACAACTTCCAACAGCAAATCCCACGTGGTAGTGAGCTGAATGCTGCATGATGACCATAACGTGCAAAGTCCTCTGCTGCTGATTGACTGGCATTCTTTGTCATGGGAGGAACCAGTGGTACTGGCAAGTGTTAGTAAGAGAAGAGACTCCTCTGACAGTCTTGTGTATTCTGGGTTAATAGATTGAAAAACAAACTAATTGCATTTATCCACACGCAGAATGTTATATCGGGGTCTATCCACTCTTGGGATGCATATAACTAAGATCAGTCAAAACCTCAGGAGGCTGGGGACATACTGGCAGTTTCTTTGTGGGCACAAGAAGTAGCCATGGAAACTTAGATGGTGGCAGGCTCCTCGAAAGGAGCGTGGAGTATAAGGTATGGAGTCTCTCATTTCTTGTAAGGAGTATGCCCAATCCTCACAGATACTGTCAGAGTGTAAGAAGAGTGGGCCCAGTGTCAGCAAGTTGTTTGGCCTCTACACCATTTTTCCATCTTTGTATGTTTACTGTACCTTAGGATTTGAGCCTAGGAATAAGAATTCATTAGGCTTTCACAGCTATCTTTCAACCAGAGCGTGCTCACTGTTTATTGGGTTCCAGAGGACCTGAGAAACTCAGTCTCCTTACCTTCTTCTGGCTCTATAATCTAATACACTAAAGACACCCCCTGTCATCTTCATCATCTTCTTTCCATTCCCCTTCCTCCTCTTCCTCTTCCTCCTCCTCCCCCTTCTTCTCTCCCTCTCCTCTCCCTGTCCTCTTCACCCTCCCCCCTTCTTCTTCCTCCTCTTTTTTTATTTTTGTTTTGCTTTCCATCGGTGAGTTCAGAAATACTGATGTTTCTGAAGAAATAGTATTACCATACTGGCTGACACCCTCAAGAGCCTAGTTTTTAATGTCACAAAATGTTCTCCATGCTTACATTTTTCCTATAATTACTGATAGTGTTGTATTTGTTTAAATTTTTTAAAATATTATTTCTATGTCTGGTTGGTTCTGTTGCTGTTCTTTTAGCATTTTGATTTCTCTCTGCGTGGTGTCAGGAGTTGGAGCGTCAGGTGAACGCTGCTGAGAGTACCTCACCCTTTTTTGTAAGATGAAGGGTGCTTTCCATTCCCCATTCTTCCAAAGTGACAGGTGAGGGCAAGAAATCCTAATACACATGGCAGCAACCAGGCAAACGGTGGTACGTATTGGAAAAATGAGAACATTTCCAACAGTCGATTCTGAGGATTTTGGAAAGAGTGGAGTATTAGGCATAAAATGCAAAAGTGAGGTTTTAGTAATGATCCATACACTAACATAGTATTCAAGTAAATAGGTTCAGCAAACAGTGATAATGATAGAAAACACAAGCTTAAATAACTGTAGAAGGAAGATCAATAGGTCAAGCATTCATTGGAAAGCAGCCTTCGCTGGAGTAGCCGAGAAAAATCCACGAGGAATGAAGATAAGGTTGAGAAATGACTGTAGTGAGGGAACCATACAGGAAAAGGAAGAATGGTCAGGAGTGCAACATTTAAGCTCCCTTGTCTATGGTAAAGAGATGCAGCCTATCACTGGGAAATGAGGAGACGAAAGACACAGGAAAGGTACTCCATGAACTGTAGCTTAAAATTGCATAAATACATGGAAAGAACAAAAAACCCAAACCAGAGAACACACATCCAGGGGCGCAACCGTTCAGAAGCACCTCACGGTTGTAGTTAAGATGCAACGTACAGAATAGAGAAAGACACCTTACCACATACGAGGCAAGTCCCTTTAGCCTGGTAACCTTTTAACTGGAACCCTGGTAGTAGAAAGCATGGGCTCCTGTATTTTCAAGCACTGAAATAAAATAATTGCCAACGAAGTTGCCTCTCTTCAGCAGTGTTACCCTGTAAACGGTAAGATTAGTGAAGAACTACAGATCTTTCTCCATGAGTATAAAACATATCACACTGTGAATATAAGGGGTACCGTGGATACTTCAAGAAATGTTGCACAGAAACAAAAAGGTGAATGTAATCAGGGTTTGAGTGATGGTTCAAGGGTTAAGTGTACTGGCTGCTCTTTCAGAGGACCGGAGTTCAATTCCTAGCAACTGATGCCTTTTTCTAGCTTCTGCGGATACTACATGCACATGGCACATACATAGGAAAAGCACCCAAACACATAAAATAAATAAAAATTAAATCTCAGAAAAATCAAAACAATGGATGTAATCAAGAGCCTTGAAAAGGATTATAATCCACTAATAAAAACATCAGAATGAAGAAAGTGTTAGACATTAACTCCATAAATTAGCAGACCTCTAACATGGAGGAGAAAAAAAAAATTAGTAATTATTCTTTAACAAGATTAATTGTAACTGATTTTTCCAACTCATAGCTGAACACTGACAACCAGGATTTAAAGAAGAACACTGCAAGCTACTACTTAAATGTGAGTTTATAATACGGGTGAAGGACAGACTGAAACAAAGGAAAACTGTTTTGGAGCAAATAGAATATGAACGAATTCAACAGTAGCCATATTTACATTAGTCAAATCATACTGCATGCCAAAGTAAACCAGAAGTTTTTTGCACATGAAATATTGGACTAGTGTATTATGATGACCGCTAATTAAAGAGAATCTATCCAAATTAATAAAAAAATGATGAAATGGACGATTTCATCAGACATCTTTGAGATAGAAAAGATTTCTTAGGAATATATTTTAGAATGTATTTTAGTAGTTACAGAATAGGAAATTGAACAGACATGTATTTGTACATAAATATGACCTTCCAGAATTCTACAAAATGAAATTAATGTTATATCAATCAATAAGAAGTGATGCCATTGAGGCAACAATAGGGTGCCACAACTAATCAAAGCTCCTTGTAAAATCTCTTTGACTAGTTCTTCTACCAGACAGGTATAAAAGTACATGTCTATGCCCATCAAGCTGATTCATAAAGTGGAATAGGAATATGGTAATCTTGGAGACTTGCTATATTAGATATCAGCCAGTATTAGATAGCAAGACTAGGTAGGAATCAGAGAAGAAAATGTACATGTAAAAATCTTCAATAACAACAGACAACAGAATTCTTTAAAACATTAAAAATATGCCCCGTGATAAGTGTCATTTCATACCAGAGATACCAGGTAGTATAATTTATGGAAAACATTATATGTAGTGTGCATGTAGTTAGAATTTGGAACACACTCACATGTTCATTTCAGTTTAATGTCTGCTAGAATTTGGCATCTCTTCAAAGTTAAAAAAAAATGGATAACTTTTTCAAGTGGCCAAAGAAAGGAATATGACAACATAATATTACAGTCTGGACAACTATTTATACTGAATATAAAAAAGGAGAAAACATTTTGCCTAAATTAATAGCAATACATATTGTATTCCCTCTCATTTACTTTTTTTTTTTTTTTTTTGAGAACTTCTTATTTGCACAAATTATTTGGTCAAGGTTTCCCTTCCTTTCTTTTATCCAACTTCTTTCCTATCCCACTATCACTTCTCCCTCCCACACTCATGTGCTCTACTTTTTAAACCCACTGAATCCACTTTGTGCTACCAGTGTGTGTGAGGGTGGAGGGCCATTCATGGAGCTTGAGTGCTCTCTTGGGGGCCATACCCCTGTAGAAACCTCAACTTTCCATCACCTAGTAGCTCTCAGTTACCAGTTGCTTCTGAGTTATCAATGGGACTTTGTCAGTCCCTTCTTCATTTATGTTGGGATTTTGATTAGCTTTATTCTGCAAAGGCTTTATATACATAGTCCTAGCTATTGTGAGTTCATGTGTGCAGTGGCGTTGTCTTGGCCTGACATTGCTGTTTGAGAAAGTTATCTACCACTTCTGTTCCTACGATCCTTCCTTTCCTTCTTCCATGGTGACCCCTGACCTCTGGGAGGAAGGTGTGTACTGCAGATATCTCCTTTAGGATTGGGCACTCTGACAAATGAAGAGTGACAGCTGCACTAATATATGCATATAAAGATAAGTACTTAGGAGACTCTTTAATGCTATAGCTATATAGAAAAAGGTTGAAGTAGCTGCTGCCTGACAGCCGGTGACCTACCCATCCACACGTTCTTGACCCAGTTACAAAGCAAGAGTTCTATCTCATGGAGTGTGCCTTAACTCCAACTAGAGTGGATGGTTGCTCCTTTAAATCCCATGCCACTACTGTGAAACTAGGTATAAAGTATTAGGCCAGTTATTATTGTAGCTCTCAGGGTTCACAGCTGGCTAAGCATGTTGATAACTTTTCTTGTAGTATTGTGATGGCACTTCCCAGTACTACAAAAGCTAGCCAGCAGGCATGAAGCTTCAAGATCAGTATCAGCTTAATCTTTCATGTTTTATAACTGAAGTTTAAAGTGGCTTCACAAGTGGGGTCTTACCGTCAAGTTCTAGGGAGTAACTAAGAACAGTAGCAATATTTTTTATTGTTGGTGCAGGGGAGGTCTTTGGAATCAAACTATCAACACCTTGAAAATAGATAACGTCAAAGCACTGAATATTTTGTTCAGTAATATATGGTATCTGGGGCATTTCATTTTTCCCTATCTAAGGTATCTCTATTCTATCTTTCTGTCTGTCTGTCTGTCTGTTTATCTGTCTATCTATTAATCAGTCATCTGTCTATTTATCTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCCACCTTTCTTTTAGAACCTTTCAAAGTGGTTTCCATGAGGCTGTTAAAGAAAGGTCTTTTAGTGTTAGTATCCCACCCTCTGCCTTGTCCTCTCACCCTCACCTCACTGAACCTTACCTTCACCATTATTCCCCTTTACTCATTTATAACATTTGTTTTATATCTCCCTTTTGGCCTCTTTTTGTTTTCCTGACTTCTATAGGTTTTCCTATTTAAGCACATACATCTAAAGATTCAGAGGTCGGATCCACATATGAGAGAGAACTTGGGTCATCTTTCAGGATCTGGGTTGTCTTTCAAAGAATCATCTATTTCCAGCTCCATTTATTTACCTGCAAAGGTCACAATCTAATTTTTATTTACAATATAATAATTTTTTATTTTATGTGTATATAAATATCATATTTTAATTATCTATTCATTAGATAATGGTCATCTCTGCTCTTACTTCAATTTCCAAGCTTTGAACAGTCATGCATGTGTGTATTAACCATTTCCACTGCAGCAAGAAGTTTTTCTGATGAAGTTTGAGAACAGTGTAAACTGGAGATAGAAACATACATGTTTAGAAGACAGTTCAATAATATGACCATTTGAAAGACAAAATAGTTTCTTACTTAAGGATTCAGACTTCTCAAGCTATGATTTTGAATAAATTATGTCTATAATTTTGTACAATTAATATATAGTAAAAGATACCTAAATGTGTATTGATATTCTCTACATATAGGCACATACCAGTCAGACTCGCAACCCAATCCTTTCTTAGCATTTATTTTTAATAAATTTTTTTTTTTTTTTGCAAAAATGTATTTTAGTCCAAGAGGCAAAGAGATTTGTAGAACAGAAGATGGATTCCTGGGAGCTTCTGCAGCAGCTGCCCTCCAGTGTGGGAGAAAGGCGATCGTAGGCAATGACCAATGGAAGACAGAGCCTGTGTGGCTTTTCAGGGCGAAGGAATCAAATTTATAAGAAATGTATAATAATCCTTTTATGAACCTACATTTTTTGCTCCTAAAACAGAATGTGAAGCCTATGTTTAGTGGGTAGCTAGTGAAAGAAAATCTTTGCACCTCACATAATGAGCTGTGGTATCAGATGGTGTGTATACAATTAAGGTTATAAAGGAATAGCAGCTCAGGTTAACAACACAGTTAAAAATTAATGCGCCAAACAATAGCGAAGAAGTAGGTGAATAACTTCTTTCCATGTATTTGTCAAAAGAAGAAGCAGTGGAGGAACATGGCTTAGGACTGCCTTACCTGTTTGTGTAAAATTTCCCTCATTAAGCTGAAGAATCATGAAGAAACCCCACAATTATATTTGAACTGAATAAATAATATATTTGATTTAAGGATAGTGATTTTTTTTTTTATTATATTGTTGTAG
Seq C2 exon
GTGTTCTTGAAGTTTATACTCCAAATGAGAGTTGCCTGGAAAATGCAGAGAGTCGTATGTGGCCAGTGGGAAGCATCAACAGAAATCTTTCAAATAAAGAGATGATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036898-Zfp157:NM_028130:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: