MmuINT0178984 @ mm10
Intron Retention
Gene
ENSMUSG00000046351 | Zfp322a
Description
zinc finger protein 322A [Source:MGI Symbol;Acc:MGI:2442566]
Coordinates
chr13:23362803-23368205:-
Coord C1 exon
chr13:23368120-23368205
Coord A exon
chr13:23362876-23368119
Coord C2 exon
chr13:23362803-23362875
Length
5244 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTATACTTGTGTTTTGCAGAAA
3' ss Score
9.81
Exon sequences
Seq C1 exon
GAGAGGGAAGAATTAAATATTATGAGTACTTCTGGATTAGAGACCTTGTGGATCTGAAAAAAATAAATCGTTGGGTTCTTGTTAAG
Seq A exon
GTAAGTGGCATACATCTGTTTCTATATAAATGTGAATTTTGGAGTAGGGATGGGACAAGAAAGAAGGTAAAACATACTTGGGAAAAGGAAAAGGGTCTTTCTGGTGACTAACATAGTGGCCCTTTGATAACCTTTCAGTACACCTATTTTTCTAACAGGCATACACAGCAGATTTGCAACAATTGTCCTTCTTTTGATTTACCATACAAAGAAGGCAGTGTGCCCAATGCTCAGACAGGCTCTAGGATGGATATTTAAACCTGGCTCTGTTACTTAACTGCCTGTGAGTTCTTGTGTAATTAGGTAACTGTCATAGCAACAGGTTTTCTATCAGTAAGATGGTGGTAATATTTGATTTTACAGTGTTCTTGGGAGGATTAAATGTCCATAATCCATGTAATCAATGAAAATTGAGGCAACCCCTGGTCTGAGGCTGTACAGCAAGTATGGTTTTTAAGACAATACGTTAAATACTTACTGTTTGATCATCCCATATATCCTTTAACCGAAAAGAATCTTGAGCTCTGAAGTTTTGTTGCTTAGCCTGTCTATTTGAACTTTTGTCTGCTCTTCGCTTATGAAATGGAGTCTGGTGTTGCTCGTGAAAAAAACAAAACAAAACAAAAACCAGAAGTCCTCCCTTCCTAGGAGGGGTAAAGGAAGCATGTTAGAGACAGTAGCCTGGAGTAAGGATTTGGAGGATGGGTTTGTGTTTGCCAGATGCACATTGGAGACCCAAGGATAATGATACTCCTTTTTCAGTCTGAGACTTGGCTACTTGTTGTTTTTTTAATTGTTTAACAGATGCATTCTAAATGTTACAGATATTGCAGTAACCAAAAGACAAAACCCTAACCATAGTAGATGTTATGCTCTAGTAGGAGAGACAGACAAGGGAACGTACATAAAGTACATCTCTTAATGTTGGATAGTGATGCTGTAAGGTGGTGTGAAGGGCCATGAAGGTGTGTTGCTTTTTTAGGTAGTAAGTTTCAGGCTACTTAAATCGGATAATGGAGAAAGCTACATTGAGGAACAGTGGTTCCTCTACCTAAAGTAGAGGATTTTCTACCTAAAGTAGAAAAACAACATATTTTGAGGTGCCTGAGAGGATGAAAATGGCAAACATTCCATAGTATGGAGGGCAGTAAAACTTTGGATTTTATTGTAAATGTGTGGGAAGTATCATATTCTGTTTTGAAGACTGACAGCCAGATCATATTTTATTTGCATACGAAAATTGTTTCCTGGTTTAAAATTGGTTTTCTGTTTGTTTTTCTTGTGCATCATAATTTCTTGGCTACTGAGAGCAGTTGTGATGTCTTGGGCTGGTAGTTTAATAAGATAATCTGATTCATTTCCCAAACTATGAGCAAACTCAGTTAAATAGCTGAGGCAGGAGGATTGGAAGTTACAAAACTAGCTTGGGTAACCTAGGGAAGACCTTTCTCAAAGTGTAAAAAGGATAGGGCATATAGCTCAGTGGTGGAGTATGATGTGTGTGCAGCCTTTGGGTTCAATCCCTATCACCATGAGACAGTTAAAGAACAACATACTGTATTTTTGTTTGAACATTTCTATATTTTAGCTCAACAAAGATATTGTAGGCTGTTTTGCAAATCATGATATCTACCATGTCTCCTGATTGCATTCAGTGATGAATGGTATCTAGAACCTAGAATCTTAGTATTTAATATGTGCATTATTGCTGTGCTTGGGAGCTGACATTACTAGGATGGAAAACCCTTTTCATGTGTACATTGTACAGCTTCTCTAGACAGTACAAACTGTGACCTCATTCTCATACTGCCCTTTAATTCCAGCTAACCACAGTACAGAGTTCATTCTAATCTTGTTCTTTTCTATTTGTAATTTCCTTCTGTAACTGAGGGGAATCTATGTTCCCTTATCCAACTCTGGTATACATACTAACTAGTATGTACTATGAGGAAAAGCCCCATAAATAAGGTTCAGTAATTGTGTATATACAGTTTGGGAGGCTGTGTACCTCTAATTGAAGTACTTGGGGTGGGAGTCTTAGGCAAGCAGATCAGAAAACAAGACCCACCTGAGCTATATAATGAGCCAATTTCTTAAAAAAAGGTAAAAGAAAATTAAAAATAATTATTGTCTTTAGCTTGAGTTTATATAGTCTCATACTATGTAAGAGTTATTTTTTTTTTTTTCTACTTTTGGGTGTTCATGTTATTTGTTTGAAATGAACTGTCTTTTGGTTTGTTTTAAAATGGGGTCTCAGTTTGTAGGCCAAGCAGGCTTGGAATTTTATAGCCAAGGCTAGCCTCAAATATTTACCAGTTCTTCTCATGCTCCAAGTACTAGGAGTATAGATGTGAGTCATCACACTCGGGTGTCATTTGCTTTCATGTGTCATTTTGCAGCTCCTTGGCACTGCTAGTGATAAGGGCCTAGGGCCCTACATATGCTGCACTACAGAGACCTATCCCAGGCCACCCATTTATTTCTGTTAAGTATATATGTATGTAGAAATGTGTTCTTAGAGAAATATGGCACTTCATCCTTTGGTTCACATCAGTTCTGTCCTCTTAGGTTTTGATCCCATTTTCACCTATCTTGTGATGATGCAAATAAGACATTAACATTAGTTTCTTATTTTTTCCTAATTTATTTTTGACAAAGTTTATAAGTACATTTTTAAAAATATTTTTAAAATATAGTTTTAAATAGGATTTTTTAAATTTCTGATTTCTTACACAAACTACAGCATTTGCTTGCACTTTAAAATTTTTACAGTTGAATGCTTGGGAGTGGTGGCACACACTTAATCCCAGCATTTGAGAGACAATGTCAGGTGTGTTTGAGGCCAGCTTGGTCTCAAGAGAGAGTTCCAGGACAGCCAGGGTTACATAGAGAAACTGTCTTGAAAAACCAAAACAAAAAATATCTTTAAAAATTTACATTTGGAGTTGGAGAGACAGCGCAGCTGTTAAGGACATTTTCAAAGGACCCAGGTTTGGTTACCAGTACCCACTTGAACTAACAATAGGTTGTAACTACAACTCCATAGGATTTGATGCATTCATTCTGGTCTCTTTGGGCATTGCACATAGATGGTGCATGTACACGGTGCATGGTTTGAATGACAATGGCCCCCACAGGTTCATATTTGAATACTTGGCTCCCAGGTGGTGGAACTGTTTGGAAATGATTAGCAGTCATGGCACTGGAGGTGTGTCACTGAGGCTGGGCATTGAAGTTTCAAAATATGTCATTCCTACTTAGTTCTTTCTGCCTTCTACTTACAGATCATGATGTAAGCTCCCAGATATTCCTGACATCATGCCTTTGTTCCACCATCATGGATTCTAGCTCTCTAAAATCATAAACCCAAATTAAATGCTTACTAATTGCCCTGGTGTCTTATCACAGCAATAGAAAAATAAGATAGTGCATATACATTTGTGCAGGGAAGAAGACTCATACACATAAAATATAAGTAAATCATAAACAAACCAAAGGGTGTGGCAGAGAGGAGGGAAAACAACTTTACAGTTTGGGCTGGAGAGATGGCTCAGCAGTTAAGATTGCTTCCTGCTCTTCCAAGAGGACCTGAGTTCAGTTTCAAGCATTGTCACAACTGCCTATAATTCAGTATAGGGGGACCCTTTTCTGGCCTCTTCCTGCACCTGCACTCATGTAGCATACAGAGACATAGAAAGAAAGAAAAATGATTTTGGTATGGGTGTTTTGCTGGCTAGTTTTATGTCTGTTTGATACAGCTAGAATCCTTTTAAAAGAGAGACCTTGGGAAAATACCTCCACCAGATTGACCTATGGACAAACCTGTGGTGTTTGATAATGTGGAAGGTCCCAGCTAAATTGTAGATGAGGCCAGCCTTGGGCTAGGGGTCCTAGGTGCTATAAGAAAGAATGCAGGCTTGTGTAAGCCATGGAGTGCAGCCTGGTACGCAGCAGTTCTCCATGGCCGCTCTTATCAGCTCCTGTCTTCATTTTTGCCAGTGCTCTTAACTAACTACTGAGCCATCTCTCCAGCCTATGTGCTAGTGATTGTTAACCACAGGTCTTTACATTCTAGGCAAAAACCATGCAAGATTTTTGTTGGTGGTTTTGTTTTTTTTGTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTGAGGCAGTTTCACCAAGTTGCCTCGACTGGCTTTGAACCTGTTCTTTGGCTCAGATAAGCCTTGAACTTTTATGATCCTCTTTATTCTCCCAAGTAGCTGGGATTAAAAGCTTCCCTCATCCCAAGGCCAGGCAAAGTACCAGTATTTTAATTTATAATTAAAATTATAAGAGCTAGAGAGATGACCGAGTAGTTTAGAACACTTGTTGCTCTTGAAGAAGGTTCGGGTTCTATTCCAAATTATACGGTGGCTCACAGTTCCAGGGGATTCTTCTCTGCCTTCTTTGACCAGGCATGAACTGTTGAACGTACATACATGCAGGCATAAAGGTGAACAAAACATTCACACACATAAAATAAGAATATTTTTTAAAGGGACTTTGTTCTGTTCTATAGTTCATTGATTTCTAAGTTTATGTTCCTTCTTTTCTTCAACTTATTATTTCTCAGTATTTGACCTAAGAGTTATGTTTATTTAATTCTTTTAACTGTTTTTCTTCCAGTACCTATACACTTAATGGTTATCCTTTCTAGAGTTGAGTTGATGAGATTCCAAAAGAAAATACATTTGTTTTTTTTTTTTTTAATTTTTTTGAAATTTCATTTCATGTATATGAGTGTTTTGCCTGCATGTATGTTTGTGCAGCATGTGCGTGCCTGGGGCCTCTGCACAAGGGTATTGGGTACTTTTGAACTAAGGTTCTAGATAGAGGGTTAGACACCATATGAGTGGTAGGAATTGAACTTGGGTCCTCTGGAAGAGCAGCAGATACCCTTAATAGCTGAGCTATTTCTGCACCTCTTATTTGCCGTTGTTTTTTTTTTTTTTTAAAGATGTATTTATCCATTTAGTATGTATGAATACACTGTTGCTGTCTTGAGACACACCAGAAGAAGGTATTGGATCCCATTACGGATGGCTGTGAGCCTCCATGTGGTTGCTGGGAATTGAACTTGGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCATACCCTCATTTGCCATTTTTAAGGGAAATGTTTATTCACTGTTAAGTCCGTTATATGTAAATGATCTTTTATACTTGTGTTTTGCAG
Seq C2 exon
AAAGCTGTTTTTTTTAATTTTGATTTTCTCAAGACATAAAGTGAAGGCTGCTTTTCATCTGTCTGCACTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046351:ENSMUST00000145451:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types