MmuINT0179078 @ mm9
Intron Retention
Gene
ENSMUSG00000044807 | Zfp354c
Description
zinc finger protein 354C [Source:MGI Symbol;Acc:MGI:1353621]
Coordinates
chr11:50630621-50631437:-
Coord C1 exon
chr11:50631311-50631437
Coord A exon
chr11:50630714-50631310
Coord C2 exon
chr11:50630621-50630713
Length
597 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATTCTCTTTCCCATGAGCAGGGT
3' ss Score
5.88
Exon sequences
Seq C1 exon
GAGCCTGTGACCTTCAGGGATGTGGCCGTGTCCTTCAGCCAGGATGAGTGGTTGCACCTGGACCCTGCTCAGAGAAGCCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq A exon
GTAAGAGGCTTGCTGGGTAAGGGGTTAAGACTCTGCCGTGGAAGCACGTGACCCCTACCTGCTACCTGGCTTTGCCGGGAAAGGGTTTTTTCTCTAATGAACAGTCCAGTAGAAGATATCTTGAAGCTGCTTCTTTGGCTCAGAATCCTCTGTTTTCCATTCCATTATGCTGCAGAGAAAAATCAAATCTCTGTGGAGTTGCAAGTTCACTTTTTCTCTTGACATCTTTTGTGTTCCTGACTTTCTTTGCCCTTCCTTGTACCCTACCGTCAGTCTGTGTACTGCCTGGGGCCAGTGAGTAAATCCCAGTTCAGAATCTGAACTTCGTAGAAGGCATTTAGATGTTAAACACTGTACAGGAATGTCCTGTCTGAGAGAAGTCTATTTCTAGGACCGTGCGTTAATTTTGAGTTGGTCCTTCCTTCTTGCTCTATGCCCTAAATCTCCAGTGTCCCCCTGGGAAGTGAGTTACCTGTGTGTCCCACCTTGCAAGACTGAACTTCTCTGCTTTCTAGGTCAGGTGAGTAATATATGAAGTGGCTCTGGGATTGCTCTTCAGGCCGTTCATCCCAACTCCATTCTCTTTCCCATGAGCAG
Seq C2 exon
GGTTTCAGGCTTCAATACCTCCTGTGATTGGCAAGCTGCAAAAAGGGCAAGATCCCTGCATGGAAAGAGAAGCCCCTGAAGACACCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044807-Zfp354c:NM_013922:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.361
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACCTTCAGGGATGTGG
R:
CTAGGCAGGTGTCTTCAGGGG
Band lengths:
216-813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: