HsaINT0187008 @ hg38
Intron Retention
Gene
ENSG00000177932 | ZNF354C
Description
zinc finger protein 354C [Source:HGNC Symbol;Acc:HGNC:16736]
Coordinates
chr5:179076445-179077166:+
Coord C1 exon
chr5:179076445-179076571
Coord A exon
chr5:179076572-179077070
Coord C2 exon
chr5:179077071-179077166
Length
499 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATTTGCTTCCTCATGAGCAGGGA
3' ss Score
5.31
Exon sequences
Seq C1 exon
GAGCCTGTGACATTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCAGCCTGGTCTCACTGG
Seq A exon
GTAAGAATTTTTGCCTATGACGAAGAATCTGTTATAGGAACGCCTCACAGGTCCATCTTTGGGGTTCCGAGCCTGTGGTCTTGTACCCTACTGAGCCCCTCAGAAAGGCTGAATTGCTGTAGAGTGGAAAGTGTACATCTTTGTTGTGATGCCCTTCTTGCTATCTGTTTCTCTACCCTCCACTCTCCCTCACATCCTACCGCCAATCAGTTCCCTCCTTGGAGTAGGCCAATGACTAGAGATCCCAGTTTAGATTCTGAAAAACACATAGGGACCCCCCATCTTAGAGGCCTTCATTGTCAGGGCCCTATAATGGTTCTGAACTGAGACCTTCCCCGGCCATTGACAGCTCCAGTGCCCCTGCGAAGTGCTTGTGCTGCCTTGTCTGCCTCTCAGGGCTTGCCTTCTTTGCTGTGTTGGTTCAGAGTGAGTAGTAGGTCAGTTCTAGGATTGGTCTTCATGCTATTTGTTCAAACTTCATTTGCTTCCTCATGAGCAG
Seq C2 exon
GGATTCCATTTTCAATGCCAAAGTTGATTCATCAGTTGCAGCAAGGAGAAGATCCCTGCATGGTGGAAAGAGAAGTCCCTTCAGATACCCGTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177932:ENST00000315475:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.303
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATTCAGGGATGTGGCC
R:
CTAGACGGGTATCTGAAGGGAC
Band lengths:
217-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains