BtaINT0165367 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002281 | ZNF354C
Description
zinc finger protein 354C [Source:HGNC Symbol;Acc:HGNC:16736]
Coordinates
chr7:2189408-2190127:-
Coord C1 exon
chr7:2189983-2190127
Coord A exon
chr7:2189504-2189982
Coord C2 exon
chr7:2189408-2189503
Length
479 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATTTCCTTCCTGATGAGCAGGGA
3' ss Score
3.82
Exon sequences
Seq C1 exon
ATGGGTTTGCCGTTACAGGAGTCAGTGACATTTAGGGATATCGCCGTGCTCTTCAGCCGGGACGAGTGGTTGCACCTGGATGCTGCCCAGAGAACCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCACCCTGGTCTCGCTGG
Seq A exon
GTAAGGAGGCTTGCCTGTCATGGAGAGTCTGCTGTGGGAGGACTTTAGAGCTCCCTTGGAGGTTCAGAGTCTGCAGGTTTCTGTCCTCTGCCCTGGGAAAGGACAAATCTCTGTAGAATTAAAAGTGTACCTGTTTGTTTTGATGCCCTTCATGCTGCTCTTTGTCCTCTGCCTTCCTCCCACCCCACGTCCTTAATAGTTCCTTCCTACTCCAATGATTGGACCCCCGTTTAGATTCTGAAAAATGCAGAGGACTCCCATCGTCATGGCATTCATAGACAGGGCCCCGTATTGTTTCTGAACCAAGACCCACCTCCTGCTCCATGCCTGTGAAAGCCTCAGTCCTCTCAAGAGTGCTTTTGCTGCCTACTTTGCCTCTCTATCTAGACTTGTATTATCTTTCCTGTAGGTTCTGGTTTGAGTTTGGGGCTTGCTTTTCATGCCATTTGTTCAAACTCCATTTCCTTCCTGATGAGCAG
Seq C2 exon
GGATTCCATTTTCAATGCCAAAATTGATCTGCCAGTTGCAACAAGGAGAAGATCCCTGTATGGTGGAAAGAGAAATCCCTCAAGATACCTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002281:ENSBTAT00000021140:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=83.7)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTGCCGTTACAGGAGTC
R:
CAAGGCAGGTATCTTGAGGGA
Band lengths:
239-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]