RnoINT0168093 @ rn6
Intron Retention
Gene
ENSRNOG00000029205 | Zfp354c
Description
zinc finger protein 354C [Source:RGD Symbol;Acc:69405]
Coordinates
chr10:36313860-36314593:-
Coord C1 exon
chr10:36314467-36314593
Coord A exon
chr10:36313953-36314466
Coord C2 exon
chr10:36313860-36313952
Length
514 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCTCTTTCCCGTGAGCAGGGT
3' ss Score
7.74
Exon sequences
Seq C1 exon
GAGCCTGTGACGTTCAGGGACGTCGCTGTGTCCTTCAGCCAGGATGAGTGGCTGCATCTGGACCCTGCTCAGAGAACCCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq A exon
GTAAGGAGCTCCCTGGGGGCTGAGAGTCTGCCACAGAGGCACGAGATCCCTACCCACCACCTGGCTGGGAAGGGTTTTCTCTAATGAGCAGTGTAGTAGAAGAACGTCTGTGTCCATTCCATTGTGCTGCAGAGAAAAGCCAATCTCTGTGGAGTGGAAAGTATACTTTTTCTCTGACATCTTTTGTTTCCGTCTTTCTTTGCCCTTCCTTGCACCCTACTGTCAGACCGTCTTCTGCCACAGGCCAGTGACTAAATCCCAGTTTAGAGTCTGAAATTCATATAAGACATTTAATTAAGTGTTAAAAACCATCCAGGATACCCTGTCTCAGAGAAGTTCATTTCCAGGACCGTGCATTAGGTTTGAGTTGGTTCTTGCTTCTTGTCCCCTGTCCCCTGGGAAGTGATCAACCTGTGTTAATCCACTGTAAAGGTCAGGTGAGTGGCTTGTGAAGTGACTCTAGGATCGCCATTCAGGCCATTCACCCCAGCTCCTTTCTCTTTCCCGTGAGCAG
Seq C2 exon
GGTTTCAGGCTTCCATACCTCCCGTGATTGGCAAGCTGCAGAAAGGGCAAGACCCTTGCATGGAAAGAGAAGCCCCGGAAGACACCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029205:ENSRNOT00000000248:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACGTTCAGGGACGTC
R:
CTAGGCAGGTGTCTTCCGGG
Band lengths:
216-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]