HsaINT0187008 @ hg19
Intron Retention
Gene
ENSG00000177932 | ZNF354C
Description
zinc finger protein 354C [Source:HGNC Symbol;Acc:16736]
Coordinates
chr5:178503446-178504167:+
Coord C1 exon
chr5:178503446-178503572
Coord A exon
chr5:178503573-178504071
Coord C2 exon
chr5:178504072-178504167
Length
499 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATTTGCTTCCTCATGAGCAGGGA
3' ss Score
5.31
Exon sequences
Seq C1 exon
GAGCCTGTGACATTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCAGCCTGGTCTCACTGG
Seq A exon
GTAAGAATTTTTGCCTATGACGAAGAATCTGTTATAGGAACGCCTCACAGGTCCATCTTTGGGGTTCCGAGCCTGTGGTCTTGTACCCTACTGAGCCCCTCAGAAAGGCTGAATTGCTGTAGAGTGGAAAGTGTACATCTTTGTTGTGATGCCCTTCTTGCTATCTGTTTCTCTACCCTCCACTCTCCCTCACATCCTACCGCCAATCAGTTCCCTCCTTGGAGTAGGCCAATGACTAGAGATCCCAGTTTAGATTCTGAAAAACACATAGGGACCCCCCATCTTAGAGGCCTTCATTGTCAGGGCCCTATAATGGTTCTGAACTGAGACCTTCCCCGGCCATTGACAGCTCCAGTGCCCCTGCGAAGTGCTTGTGCTGCCTTGTCTGCCTCTCAGGGCTTGCCTTCTTTGCTGTGTTGGTTCAGAGTGAGTAGTAGGTCAGTTCTAGGATTGGTCTTCATGCTATTTGTTCAAACTTCATTTGCTTCCTCATGAGCAG
Seq C2 exon
GGATTCCATTTTCAATGCCAAAGTTGATTCATCAGTTGCAGCAAGGAGAAGATCCCTGCATGGTGGAAAGAGAAGTCCCTTCAGATACCCGTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177932-ZNF354C:NM_014594:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.303
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATTCAGGGATGTGGCC
R:
CTAGACGGGTATCTGAAGGGAC
Band lengths:
217-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)